Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lcho_0591 |
Symbol | |
ID | 6159700 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Leptothrix cholodnii SP-6 |
Kingdom | Bacteria |
Replicon accession | NC_010524 |
Strand | - |
Start bp | 638060 |
End bp | 639028 |
Gene Length | 969 bp |
Protein Length | 322 aa |
Translation table | 11 |
GC content | 70% |
IMG OID | 641663341 |
Product | RluA family pseudouridine synthase |
Protein accession | YP_001789631 |
Protein GI | 171057282 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 26 |
Fosmid unclonability p-value | 0.0464018 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGTCGGTGG TCGCCACCGC CTCGCCCCAG GTGCGCCATT TCCAGGTCGA CGAGGCCGGC GCCGGGCAGC GGCTCGACAA TTTCCTGATG CGCGAACTCA AGGGCGCGCC CAAGACGCTG GTCTACCGGA TCATCCGCAG CGGCGAAGTG CGGGTCAACA AGGGCCGCGC CGGCGCAGAC ACCCGGCTGG CGATCGGCGA CGACGTGCGG GTGCCGCCGC TGCGTCTGTC CGAACGGCCC GATCCGGCCG AATCGACCGT GCCGCCGCGC GAGTTCCCGA TCCTGCTCGA AGACGAGCAC CTGCTGGCGA TCGCCAAGCC GGCCGGCGTG GCGGTGCACG GCGGCTCGGG CGTGAGCTTC GGCGTGATCG AGCAACTGCG GCGCGCGCGG CCGCAGGCGC GTTTTCTGGA ACTGGTGCAC CGGCTCGACA AGGAGACCTC CGGCATCTTG CTGGTGGCCA AGAAACGCAG CGCGCTGACG GCGCTGCAGG ATCAGTTCCG CCAGCGCGAC ACCGGCAAGA CCTACGCAGC CCTGGTCATC GGCGACTGGC CGGAGAACAA GAAGGTGATC GACGTGGCGC TGCACAAGTA CACCGACGCC GGCGGCGAAC GCCGCGTGCG CGCGGTGGCG GCCGACCACC CCGACGGCCG GCGCTCGATC TCGCTGGTGC AGGTGCTGAA ACGCTTCGAC GGCTACACCC TGCTCGACGT CACCATCAAG ACCGGGCGCA CGCACCAGAT CCGCGTGCAC CTGCAGCAGG CCGGCCACCC GATCGTCGGC GACGACAAGT ACGGCGACTT CGCGCTCAAC AAGGCGATGG CGCGCGGCGA GGCGGTGGCG GGCTGCCGCT TCGAGCGCAT GTTCCTGCAC GCGCGCCGGC TGGCGTTTGA CCATCCGGCC AGCGGGGAAC GGATCGAGCT CGAGGCGGCG CTGCCCGCCG AGTGCGCGAC ACTGTTGGAC TCGTTCTGA
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Protein sequence | MSVVATASPQ VRHFQVDEAG AGQRLDNFLM RELKGAPKTL VYRIIRSGEV RVNKGRAGAD TRLAIGDDVR VPPLRLSERP DPAESTVPPR EFPILLEDEH LLAIAKPAGV AVHGGSGVSF GVIEQLRRAR PQARFLELVH RLDKETSGIL LVAKKRSALT ALQDQFRQRD TGKTYAALVI GDWPENKKVI DVALHKYTDA GGERRVRAVA ADHPDGRRSI SLVQVLKRFD GYTLLDVTIK TGRTHQIRVH LQQAGHPIVG DDKYGDFALN KAMARGEAVA GCRFERMFLH ARRLAFDHPA SGERIELEAA LPAECATLLD SF
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