Gene Lcho_0591 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_0591 
Symbol 
ID6159700 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand
Start bp638060 
End bp639028 
Gene Length969 bp 
Protein Length322 aa 
Translation table11 
GC content70% 
IMG OID641663341 
ProductRluA family pseudouridine synthase 
Protein accessionYP_001789631 
Protein GI171057282 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0564] Pseudouridylate synthases, 23S RNA-specific 
TIGRFAM ID[TIGR00005] pseudouridine synthase, RluA family 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones26 
Fosmid unclonability p-value0.0464018 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGTCGGTGG TCGCCACCGC CTCGCCCCAG GTGCGCCATT TCCAGGTCGA CGAGGCCGGC 
GCCGGGCAGC GGCTCGACAA TTTCCTGATG CGCGAACTCA AGGGCGCGCC CAAGACGCTG
GTCTACCGGA TCATCCGCAG CGGCGAAGTG CGGGTCAACA AGGGCCGCGC CGGCGCAGAC
ACCCGGCTGG CGATCGGCGA CGACGTGCGG GTGCCGCCGC TGCGTCTGTC CGAACGGCCC
GATCCGGCCG AATCGACCGT GCCGCCGCGC GAGTTCCCGA TCCTGCTCGA AGACGAGCAC
CTGCTGGCGA TCGCCAAGCC GGCCGGCGTG GCGGTGCACG GCGGCTCGGG CGTGAGCTTC
GGCGTGATCG AGCAACTGCG GCGCGCGCGG CCGCAGGCGC GTTTTCTGGA ACTGGTGCAC
CGGCTCGACA AGGAGACCTC CGGCATCTTG CTGGTGGCCA AGAAACGCAG CGCGCTGACG
GCGCTGCAGG ATCAGTTCCG CCAGCGCGAC ACCGGCAAGA CCTACGCAGC CCTGGTCATC
GGCGACTGGC CGGAGAACAA GAAGGTGATC GACGTGGCGC TGCACAAGTA CACCGACGCC
GGCGGCGAAC GCCGCGTGCG CGCGGTGGCG GCCGACCACC CCGACGGCCG GCGCTCGATC
TCGCTGGTGC AGGTGCTGAA ACGCTTCGAC GGCTACACCC TGCTCGACGT CACCATCAAG
ACCGGGCGCA CGCACCAGAT CCGCGTGCAC CTGCAGCAGG CCGGCCACCC GATCGTCGGC
GACGACAAGT ACGGCGACTT CGCGCTCAAC AAGGCGATGG CGCGCGGCGA GGCGGTGGCG
GGCTGCCGCT TCGAGCGCAT GTTCCTGCAC GCGCGCCGGC TGGCGTTTGA CCATCCGGCC
AGCGGGGAAC GGATCGAGCT CGAGGCGGCG CTGCCCGCCG AGTGCGCGAC ACTGTTGGAC
TCGTTCTGA
 
Protein sequence
MSVVATASPQ VRHFQVDEAG AGQRLDNFLM RELKGAPKTL VYRIIRSGEV RVNKGRAGAD 
TRLAIGDDVR VPPLRLSERP DPAESTVPPR EFPILLEDEH LLAIAKPAGV AVHGGSGVSF
GVIEQLRRAR PQARFLELVH RLDKETSGIL LVAKKRSALT ALQDQFRQRD TGKTYAALVI
GDWPENKKVI DVALHKYTDA GGERRVRAVA ADHPDGRRSI SLVQVLKRFD GYTLLDVTIK
TGRTHQIRVH LQQAGHPIVG DDKYGDFALN KAMARGEAVA GCRFERMFLH ARRLAFDHPA
SGERIELEAA LPAECATLLD SF