| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_0574 |
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| Symbol | |
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| ID | 6160143 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | + |
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| Start bp | 623452 |
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| End bp | 625197 |
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| Gene Length | 1746 bp |
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| Protein Length | 581 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 641663323 |
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| Product | prolyl-tRNA synthetase |
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| Protein accession | YP_001789614 |
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| Protein GI | 171057265 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0442] Prolyl-tRNA synthetase |
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| TIGRFAM ID | [TIGR00409] prolyl-tRNA synthetase, family II |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 33 |
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| Fosmid unclonability p-value | 0.579261 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAGCCT CCCAGTTCTT CATCGCCACG CTGAAGGAAG CGCCCGCCGA CGCCGAAGTC
AAAAGCCATC AACTGATGAT GCGCGCGGGA ATGATCAAAC GGCTCGGTGC CGGTATCTAC
AACTACATGC CGATGGGCCT GCGGGTGATC CGCAAGGTCG AGGCCATCAT CCGCGAGGAG
ATGAACCGCG CCGGCGCCGT CGAGCTGCTG ATGCCGGTGG TGCAGCCGGC CGAGCTCTGG
CAGGAAACCG GCCGCTTCGA CAAGATGGGC CCCGAGCTGC TGCGCGTCAA GGATCGCCAC
GACCGCGACT TCATCATCCA GCCGACCAGC GAAGAGGTCG TCACCGACAT CGCCCGCCAG
GAGCTGCGCA GCTACAAGCA GCTGCCGAAG AATTTCTATC ACATCCAGAC CAAGTTCCGC
GACGAGCGCC GGCCGCGCTT CGGCATCATG CGCGGGCGCG AGTTCACGAT GAAGGACGCG
TATTCCTTCG ACCGTGACGC CGCCAGCGCA GCCAGGAGCT ACGACGCGAT GTTTGCGGCC
TACAAGCGCA TCTTCGACCG CTTCGGCCTG CAGTACCGCG CCGTGGCGGC CGACACCGGC
GCGATCGGCG GCGACCTGTC GCACGAGTTC CAGGTCATCG CCGACACCGG TGAGGACGCG
ATCGTCTACT GCCCGACCAG CGACTACGCC GCCAACATCG AGCTGGCCGA AGCCGTGTCG
CTGATCGCCG AGCGCGGCGC GGCCACCGAG TCGATGGCCA AGACGCCCAC GCCGGGCAAG
AGCACCTGTG CCGACGTGGC CCAGCTGCTG AACCTGCCGC TGGCGCGCAC GGTCAAGTCG
CTGGTGCTCG CCACCGACGA ACTCAACGAA GCCGGTGACG TCGCCAAGAC CACCGTCTGG
CTGCTGCTGG TGCGTGGCGA CCACGACATG AACGAGGTCA AGGTCGGCAA GGTCGACGGC
CTGAAAGCCG GCTTCCGCTT TGCGACCGTG GCCGAGATCG AGTCGCACTT CGGCTGCAAG
CCGGGTTACC TGGGCCCGAT CGGCCTGAAG AAGCCGGTCA AGGTGATCGC CGACCGCACG
GTGGCGCAGA TGGCCGATTT CATCTGCGGC GCCAACGAGA TCGACTTCCA CCTCACCGGC
ATCAACTGGG GCCGCGACCT GCCCGAGCCC GACGCGGTGG CCGACATCCG CAACGTCGTC
GAAGGCGATC CGTCGCCCGA CGGCCAGGGC GTGCTGGCGA TCCAGCGCGG CATCGAGGTG
GGCCACGTGT TCTTCCTCGG CACCAAGTAT TCGAAGGCGA TGAACGCCAC CTACCTCGAT
GAAAACGGCA AGCCGCAGTT CATGGAGATG GGCTGCTACG GCATCGGCGT GACGCGCATC
CTGGGTGCGG CGATCGAGCA GAAGCACGAC GCCCGCGGCA TCCTGTGGCC CGATGCGATC
GCGCCGTTCA CGGTGGTGGT CTGCCCGATC GGCTACGACC GCTCGGCCGA GGTCAAGGCC
GCCGCCGATG CCTTGCACGA CGAACTGCAG GCGGCCGGCA TCGACGTCAT GCTCGACGAC
CGCGGCGAAC GCCCCGGCGC GATGTTCGCC GACTGGGAAC TGATCGGCGT GCCGCACCGG
GTGGTGATCT CGGACCGCGG CCTGAAGGCC GGCCAGGTCG AGTACCAGGG GCGCTGCGAC
GAGGCGGCCA GCACCGTGCC CGCCGCCGAG GTGGCTGCGT TCGTGAAGGG CCGTCTGCGG
TCCTGA
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| Protein sequence | MKASQFFIAT LKEAPADAEV KSHQLMMRAG MIKRLGAGIY NYMPMGLRVI RKVEAIIREE
MNRAGAVELL MPVVQPAELW QETGRFDKMG PELLRVKDRH DRDFIIQPTS EEVVTDIARQ
ELRSYKQLPK NFYHIQTKFR DERRPRFGIM RGREFTMKDA YSFDRDAASA ARSYDAMFAA
YKRIFDRFGL QYRAVAADTG AIGGDLSHEF QVIADTGEDA IVYCPTSDYA ANIELAEAVS
LIAERGAATE SMAKTPTPGK STCADVAQLL NLPLARTVKS LVLATDELNE AGDVAKTTVW
LLLVRGDHDM NEVKVGKVDG LKAGFRFATV AEIESHFGCK PGYLGPIGLK KPVKVIADRT
VAQMADFICG ANEIDFHLTG INWGRDLPEP DAVADIRNVV EGDPSPDGQG VLAIQRGIEV
GHVFFLGTKY SKAMNATYLD ENGKPQFMEM GCYGIGVTRI LGAAIEQKHD ARGILWPDAI
APFTVVVCPI GYDRSAEVKA AADALHDELQ AAGIDVMLDD RGERPGAMFA DWELIGVPHR
VVISDRGLKA GQVEYQGRCD EAASTVPAAE VAAFVKGRLR S
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