Gene Lcho_0570 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_0570 
Symbol 
ID6163186 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand+ 
Start bp618937 
End bp619554 
Gene Length618 bp 
Protein Length205 aa 
Translation table11 
GC content70% 
IMG OID641663319 
Producthypothetical protein 
Protein accessionYP_001789610 
Protein GI171057261 
COG category[R] General function prediction only 
COG ID[COG3926] Putative secretion activating protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones39 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCGTCCG CCGCCTATCT CCAGAGTCTG CCGTTCATCC TGCGTTGGGA GGGCGGCTAC 
GTGAATCATC CGGCCGATCC GGGCGGTGCC ACCAACAAGG GGGTGACGCA GAAGGTCTAC 
GACGCCTGGC GCGCCCGCCA GGGCCTGGCC GCGCGCGATG TGCGCCAGCT CGCCGATGCC 
GAGATGCAGG CCATCTACGA AGCCGGCTAC TGGCTGCCGC CGCGCTGCGA CGTGCTGCCG 
ACGGCGCTCG ATCAGGTGCA GTTCGACACC GCGGTCAACA TGGGCGTGGG CCGCTCGGTG 
CGCTTCCTGC AGCAGGCGGT GGGGGCGGGG GTGGACGGGG ATTTCGGCCC GGGCACGCTC 
GGCCGCGTGC AACGCGCCGA TCTGGGCACG GCGCTGGCGG CGTATTGCGA CATCCGCGAG 
TCCTACTACC GCACGCTGGT GGCGCGCAAT GCCAAGCTGG CGGTGTTCCA GAAGGGCTGG 
ATGAATCGCC TCAACGCGCT GCGCAAGCAG ATCGGCCTGC CGGGCTTCGA GGCCGATGTG 
CCGCTCGATT TCGGCGACGC CGGCTACGTG GCCAAGGTGC CCGATTTCGG CGAGGACCCG 
GACTACGACC TGCCGTGA
 
Protein sequence
MPSAAYLQSL PFILRWEGGY VNHPADPGGA TNKGVTQKVY DAWRARQGLA ARDVRQLADA 
EMQAIYEAGY WLPPRCDVLP TALDQVQFDT AVNMGVGRSV RFLQQAVGAG VDGDFGPGTL 
GRVQRADLGT ALAAYCDIRE SYYRTLVARN AKLAVFQKGW MNRLNALRKQ IGLPGFEADV 
PLDFGDAGYV AKVPDFGEDP DYDLP