| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_0564 |
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| Symbol | |
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| ID | 6162656 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | + |
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| Start bp | 613250 |
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| End bp | 614224 |
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| Gene Length | 975 bp |
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| Protein Length | 324 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 641663313 |
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| Product | inner-membrane translocator |
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| Protein accession | YP_001789604 |
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| Protein GI | 171057255 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG1079] Uncharacterized ABC-type transport system, permease component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 29 |
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| Fosmid unclonability p-value | 0.163517 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGATGACA TTGTCCTGAT CCTCGCCTCG GTGCTGGGCG CCACCTTGCG CATCAGCGTG
CCGCTGATCC TGTGCGCGAT GGCCGGGGTG CTGAGCGAAC GTGCCGGCGT GATCGACATC
GGCCTCGAAG GCAAGCTGCT CGCCAGCGCC TTTGCCGCCG CGGCCGCGGG AGCGCTGGGC
GCGCCGGCCT GGGCTGCGCT GGCGGTGGCG ATGGCGGTTA GCGTCTCGCT GGCGCTGGTG
CACGGGCTGG CTTGCATCAC CTTCAAGGGC GACCAGATCG TCTCCGGCGT GGCGCTCAAC
ATCATCGCGC TCGGGTTGAC GGCGGTGCTG GGCCTGCACT GGTTCCAGCG CGGCGGCCGC
ACGCCCGACG TGCCGCCCGA AGGCCGCTTC ACGACGCTGT TCCCCGATGC CGCACGGGCC
GCGCAGGAGC TGCCGTTCAT CGGCCCCTTC ATCGCCGAGG GCCTGCTCAA TCACAACCTG
CTGACGTGGT TCGCCTTCGG TTCGGTGCCG CTGGTCTGGT GGGGCCTGTA CCGCACCCGC
TTCGGCCTGC GCCTGCGCGC GGTGGGTGAA AACCCGGCGA TGGTCGACGC CGCCGGCATC
TCGGTGGTGT GGCTGCGTTA CCGCGCGGTG ATGCTGGCGG GCCTGCTGTG CGGCATCGGC
GGCACCTTTC TGACGCTGGC GCAGAACGCC AGCTTCACGC CCGGCATGAG CGCTGGGCGC
GGTTTCATGG CGCTGGCGGC GATGGTGTTC GGCCACTGGC ATCCGGTGCG CGCGTTCTGG
GCCTGCCTGC TGTTCGGGCT GCTCGACGCC ACGGCGATCC GCCTGCAGGG CATCGAGCTG
CCGGGCATCG GTGCGGTGCC GGTCGAGCTG ATCCAGGCGC TGCCGTATCT GCTGACGGTG
GTGCTGCTGG CGGGTTTCTT CGGCCGCGCC GAGTCGCCGG CTGCGCTCGG ACGGGCTTTC
AGCAAGGAGC GCTGA
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| Protein sequence | MDDIVLILAS VLGATLRISV PLILCAMAGV LSERAGVIDI GLEGKLLASA FAAAAAGALG
APAWAALAVA MAVSVSLALV HGLACITFKG DQIVSGVALN IIALGLTAVL GLHWFQRGGR
TPDVPPEGRF TTLFPDAARA AQELPFIGPF IAEGLLNHNL LTWFAFGSVP LVWWGLYRTR
FGLRLRAVGE NPAMVDAAGI SVVWLRYRAV MLAGLLCGIG GTFLTLAQNA SFTPGMSAGR
GFMALAAMVF GHWHPVRAFW ACLLFGLLDA TAIRLQGIEL PGIGAVPVEL IQALPYLLTV
VLLAGFFGRA ESPAALGRAF SKER
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