| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_0561 |
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| Symbol | |
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| ID | 6162653 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | + |
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| Start bp | 609487 |
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| End bp | 610506 |
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| Gene Length | 1020 bp |
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| Protein Length | 339 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 641663310 |
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| Product | basic membrane lipoprotein |
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| Protein accession | YP_001789601 |
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| Protein GI | 171057252 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG1744] Uncharacterized ABC-type transport system, periplasmic component/surface lipoprotein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 33 |
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| Fosmid unclonability p-value | 0.491172 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAACTGT TGCCCACCCG TCGTGTCGTC CTGGCCGTTG CGGCCACCCT CGGTGCCGTG
ACCGGTCTGC CCGCCGTTGC GCTGGCCCAG ACCGCGCAGC CCGCGGTGGT CTACGACGCC
GGCGGCAAGT TCGACAAGTC CTTCAACGAA GCCGCCTACG TGGGCATCGA GCGCTACAAG
AAGGAAACCG GCGGCGCCTA CCTCGACTTC GAGATCCAGA ACGACACCCA GCGCGAGCAG
GCCTTCCGCC GCATGGCGCA GAAGGGCGCC AATCCGATCA TCGGCGTCGG CTTCACGCAG
GCCTCGGCGA TCGAGAAGGT GGCGAAAGAG TTCCCGCAGC TCAAGTTCGC GATCGTCGAC
ATGGTGGTCA ACCTGCCCAA CGTGCAGTCG GTCGTGTTCA AGGAGCAGGA GGGTTCGTTC
CTGGCCGGCA TGGCGGCGGT GCTGGTCAGC AAGAGCGGCA AGGTCGGCTT TGTCGGCGGC
ATGGACGTGC CGCTGATCCG GCGCTTCCAG TGCGGCTACG AGCAGGGCGC CAAGTACGCC
AACCCGAAGG CCGAGTTGCT GTCCAACATG ACCGGCACCA CGCCCGCGGC CTGGAGCGAC
CCGACCCGCG GCGGCGAGCT GGCGCGCAAC CAGTTCTCGC GCGGTGTCGA CGTGATCTTC
GCCGCTGCCG GCGGCACCGG CGTGGGCGTC TACCAGGCCG CCAAGGACGC CGGCAAGCTG
GCGATCGGCG TCGACAGCAA CCAGAACCAC CTGCATCCCG GCACCATGCT GACCAGCATG
ACCAAGGGCG TCGACGTGGC GGTCTACAAC ATTGCCAGGT CGGTGAAGGA CGGCACGTTC
AAGCCCGGCA TCCAGGCGCT CGGCCTGAAG GAAAACGGCG TGGGCCTGGC GATGGACGTG
CACAACGCCA AGCTGGTCAG CGCCGACGTC AGGAAGAAGC TCGACGCCGC GCAGGCCGAC
ATCATCGGCG GCAAGATCAA GGTGGCCGAC TACATGGCCG ACAACGCCTG CAAGTACTGA
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| Protein sequence | MKLLPTRRVV LAVAATLGAV TGLPAVALAQ TAQPAVVYDA GGKFDKSFNE AAYVGIERYK
KETGGAYLDF EIQNDTQREQ AFRRMAQKGA NPIIGVGFTQ ASAIEKVAKE FPQLKFAIVD
MVVNLPNVQS VVFKEQEGSF LAGMAAVLVS KSGKVGFVGG MDVPLIRRFQ CGYEQGAKYA
NPKAELLSNM TGTTPAAWSD PTRGGELARN QFSRGVDVIF AAAGGTGVGV YQAAKDAGKL
AIGVDSNQNH LHPGTMLTSM TKGVDVAVYN IARSVKDGTF KPGIQALGLK ENGVGLAMDV
HNAKLVSADV RKKLDAAQAD IIGGKIKVAD YMADNACKY
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