| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_0560 |
|---|
| Symbol | |
|---|
| ID | 6163363 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Leptothrix cholodnii SP-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010524 |
|---|
| Strand | - |
|---|
| Start bp | 607993 |
|---|
| End bp | 609234 |
|---|
| Gene Length | 1242 bp |
|---|
| Protein Length | 413 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 74% |
|---|
| IMG OID | 641663309 |
|---|
| Product | acetate kinase |
|---|
| Protein accession | YP_001789600 |
|---|
| Protein GI | 171057251 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0282] Acetate kinase |
|---|
| TIGRFAM ID | [TIGR00016] acetate kinase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 35 |
|---|
| Fosmid unclonability p-value | 0.844026 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGAGCGACG CCGCCGCCCT CAACACGGTG CTGGTCGTCA ACAGCGGCTC GTCCTCGCTC
AAGTTCGCGC TCTACCCGCG CAGCACCGGT GACGAGCCGC CGCAGGCGCT GGCGCGTGGC
CAGGTCGACG GGCTGCAGCC CGGCGGCACC TTGCAACTGC GACTGCCCGG CCAGGCCGCG
CAGGCCCTGG CCCCGGCCGG TGCCGACGGC AACCGCCACG GCGCCGCGCT CGCGGCCCTG
CAGGCGCATG TCGACCGCGC CGCGCCGTGG GCACGGGTGC AGGCGGTGGC GCACCGGATC
GTGCACGGTG GCCCGCATTA CCGCGCGCCG GTGGCACTCG ACGATGCGGT GCTGGCGCTG
CTGGCCACGC TCGAACCGAT GGCGCCGCTG CACCAGCCCT ACAACCTGGC GGGCGTGCGG
GCGCTGCGCG CGGCGTATCC GAACTGCCTG CAGGTGGCGT GTTTCGACAC CAGTTTCCAC
AGCACGCTGC CGCGCCTCGA ACAGCGTTAC GCGCTGCCGA CCGCGCTGCA CGAGCAGGGC
CTGCGCCGCT ACGGCTTCCA CGGCCTGTCG TACCAGAGCG TGATGGGCGC GCTCAAGCGC
CGCAGCGACA AGGCGCTCGG CCGCGTCCTG ATGGCGCACC TGGGCAGCGG CGCCAGCGCC
TGCGCGGCCC AGGGCGGCCT GAGCATCGCC ACCTCGATGG GGTTCTCCGC ACTCGACGGC
CTGGTGATGG GCAGCCGCTG CGGCCAGCTC GACCCCGGCA TCGTGCTGCA CCTGTGGCGC
CAGGGCTGGA CCGTGGCCGA GGTCGAGAAG CTGCTGTACC GCGAAAGCGG CCTGGTCGGT
GTCTCCGGCC TGAGTGCCGA CCTGCGCGAG CTGCGCGCCG CCGCACGCGC CGGCCACACA
CAGGCGCAGA CCGCCATCGA CCTATTCGAC TACCGCCTGC GCCGCGAGGC CGGCAGCCTG
GGCGCGGTGC TGGGCGGGCT GGACCTGCTG GCCTTCACCG GCGGCATCGG CGAACACGAT
CACGCCACCC GCGCCGAGCT GGTGCACGGC CTCGCCTACC TGGGCGTGCG CCTGGATGCG
GCCGCCAACC GGGCCGCAAC CGGCGAGGCC ATCGCGCCGA TCCACGCCGC CGACAGCAGC
GCCGAGGTCT GGGTCGTGCC GACCGACGAA GGCCGCGTCG CCGCCGACGC CGCCTGGCAT
CTGCTCGACA GCCTGCCGGT GGGCCGCACC GCGCTGCTGT AG
|
|---|
| Protein sequence | MSDAAALNTV LVVNSGSSSL KFALYPRSTG DEPPQALARG QVDGLQPGGT LQLRLPGQAA
QALAPAGADG NRHGAALAAL QAHVDRAAPW ARVQAVAHRI VHGGPHYRAP VALDDAVLAL
LATLEPMAPL HQPYNLAGVR ALRAAYPNCL QVACFDTSFH STLPRLEQRY ALPTALHEQG
LRRYGFHGLS YQSVMGALKR RSDKALGRVL MAHLGSGASA CAAQGGLSIA TSMGFSALDG
LVMGSRCGQL DPGIVLHLWR QGWTVAEVEK LLYRESGLVG VSGLSADLRE LRAAARAGHT
QAQTAIDLFD YRLRREAGSL GAVLGGLDLL AFTGGIGEHD HATRAELVHG LAYLGVRLDA
AANRAATGEA IAPIHAADSS AEVWVVPTDE GRVAADAAWH LLDSLPVGRT ALL
|
|---|
| |