Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lcho_0541 |
Symbol | |
ID | 6161335 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Leptothrix cholodnii SP-6 |
Kingdom | Bacteria |
Replicon accession | NC_010524 |
Strand | + |
Start bp | 588672 |
End bp | 589373 |
Gene Length | 702 bp |
Protein Length | 233 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 641663290 |
Product | pyrimidine 5'-nucleotidase |
Protein accession | YP_001789581 |
Protein GI | 171057232 |
COG category | [R] General function prediction only |
COG ID | [COG1011] Predicted hydrolase (HAD superfamily) |
TIGRFAM ID | [TIGR01509] haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED [TIGR01993] pyrimidine 5'-nucleotidase |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 43 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAGTCCG GCACCCCGGT CTGGCTGTTC GACCTCGACA ACACGCTGCA CAACGCCTCG GCGGGGGCGT TCCCGATGAT CAACCGGGCG ATGACCGAGT ACATCGAGCG CGAGCTGGTG GTCGATCGTG ACGAGGCCTA TCGCCTGCGC GGCCACTACT GGCAGCGTTA CGGCGCGACC ATGCTCGGGC TGATGCGCCA CCACGGCGTG AAGGCGCCGC ACTTCCTGCA TCACACCCAT CTGCTGCCGG GGCTGGAGGC CCATCTGCAG GTGCATCCGC ACGACGTGGC GGCGCTGACG CGCCTGCCCG GCGCCAAGTA CGTGCTGACC AATGCACCGC AGGCCTACGC CGAGCGGGTG CTGGGTGAGC TGGGGCTGGC GCGGGTCTTC GACGGCGTGA TCGCGATCGA CCAGATGCGC ATGTTCGGCC ACTGGCGGCC CAAGCCCGAT GCGCGCATGT TCAAGGCGAT CGCGGTACGC CTGGGCGTGG CGCCCGGGCG CTGCGTGCTG GTCGAGGACA CGCTCGAACA CCAGAAGGCG GCGCGCCGCA TCGGCATGCG CACGGTGTGG ATGCAGCGCT GGGTCCGGCG CCATGCGCAC GGTCCCGAAG TGGGTGTTCG CCTCATGCGC AAGCCCGCTT ATGTGTGTGA CAGAATCCGC AGCCTGCTGG CTCTACAGCG TCTTTGCCGA CCCCCATTGT GA
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Protein sequence | MKSGTPVWLF DLDNTLHNAS AGAFPMINRA MTEYIERELV VDRDEAYRLR GHYWQRYGAT MLGLMRHHGV KAPHFLHHTH LLPGLEAHLQ VHPHDVAALT RLPGAKYVLT NAPQAYAERV LGELGLARVF DGVIAIDQMR MFGHWRPKPD ARMFKAIAVR LGVAPGRCVL VEDTLEHQKA ARRIGMRTVW MQRWVRRHAH GPEVGVRLMR KPAYVCDRIR SLLALQRLCR PPL
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