| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_0534 |
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| Symbol | |
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| ID | 6160751 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | - |
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| Start bp | 581375 |
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| End bp | 582415 |
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| Gene Length | 1041 bp |
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| Protein Length | 346 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 641663283 |
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| Product | NifR3 family TIM-barrel protein |
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| Protein accession | YP_001789574 |
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| Protein GI | 171057225 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0042] tRNA-dihydrouridine synthase |
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| TIGRFAM ID | [TIGR00737] putative TIM-barrel protein, nifR3 family |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 44 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAGATCG GCCCCCACCT GCTGCCGAAC CGGCTCTTCG TCGCCCCGAT GGCCGGGGTC
ACCGATCGGC CGTTCCGCCA GCTCTGCAAG CGCCTGGGCG CGGGTTACGC GGTCAGCGAG
ATGGTGACCT CGCGCCCCGA ACTGCGTGAC AGCCTGAAGA CCAGCCGCCG CCTCGACCAC
ACCGGCGAGG TGGCGCCGAT CGCGGTGCAG ATCGCCGGCA CCGAGCCCGA GATGATGGCC
GAGGCGGCGC GCTACAACAT CGAGCGCGGC GCCCAGATCA TCGACATCAA CATGGGCTGC
CCGGCCAAGA AGGTGTGCAA CGTCTGGGCC GGCTCGGCGC TGATGCAGAA CGAGAGCCTG
GCGCTGCGCA TCATCGACGC GGTGGTCGCC GCCAGCGCGC CGCACGGCGT GCCGGTGACG
CTGAAGATGC GCACCGGCTG GTGCCAGGAA CAGAAGAACG CGCTGCAGAT CGCGCGCGCC
GCGCAGGACG CCGGCATCGC GATGGTGACC GTGCACGGCC GAACCCGCGA GCAGGGCTAC
AAGGGCGAGG CCGAGTACCG CACGATCGCC GCGGTGAAGG CCGCGCTGCA GATCCCGGTG
GTCGCCAACG GCGACATCGA CAGCCCCGAG AAGGCCGCCC GGGTGCTGCG CGCGACCGGC
GCCGATGCGG TCATGATCGG CCGCGCCGCG CAGGGCCGGC CGTGGATCTT CCGCGAGATC
GCCCACCACC TGGCCACCGG CCAGGCGATG GACGCGCCGC GCACGCTGCA GGTGCGCGAC
TGGCTGCTCG AACACCTGCA GGACCACTAC AGCCTCTACG GTGAACGCTC GGGCGTGCGC
ACCGCGCGCA AGCACATCGG CTGGGCGGTG CACGCGCTGC CCGGCGGCGC ACACTTCCGC
GCCGAGATGA ACCGCATCGA GACCACCGCC GACCAGTGGC GCGCCGTCGA CGACTACCTG
AGCGACCTGG CCGATGCCCA CGAGCGCTGG CCACAAGCCG CCGCTGAACC CACAACGATT
GAAGAAACAC TCGCCGCATG A
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| Protein sequence | MQIGPHLLPN RLFVAPMAGV TDRPFRQLCK RLGAGYAVSE MVTSRPELRD SLKTSRRLDH
TGEVAPIAVQ IAGTEPEMMA EAARYNIERG AQIIDINMGC PAKKVCNVWA GSALMQNESL
ALRIIDAVVA ASAPHGVPVT LKMRTGWCQE QKNALQIARA AQDAGIAMVT VHGRTREQGY
KGEAEYRTIA AVKAALQIPV VANGDIDSPE KAARVLRATG ADAVMIGRAA QGRPWIFREI
AHHLATGQAM DAPRTLQVRD WLLEHLQDHY SLYGERSGVR TARKHIGWAV HALPGGAHFR
AEMNRIETTA DQWRAVDDYL SDLADAHERW PQAAAEPTTI EETLAA
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