| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_0530 |
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| Symbol | |
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| ID | 6161283 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | - |
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| Start bp | 576416 |
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| End bp | 578770 |
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| Gene Length | 2355 bp |
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| Protein Length | 784 aa |
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| Translation table | 11 |
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| GC content | 73% |
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| IMG OID | 641663279 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) |
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| Protein accession | YP_001789570 |
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| Protein GI | 171057221 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 42 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCCCGAC CCGCGGAGGA GATCCGCAGC GATGCAGTAC CCGCGATGAG CCACCCACCC
GATGATCCCC CCGCGTCCGG CCGCACCGGA TCGCCCACCC CGCGCACGGA TCGATCGGCG
CTGCTGCCGG CCCTGACCCG GCTGTTCGAC GACGGCCCGT GCGCCGCACT GGTCTGCGGC
GCCGACGGCC GCATCACCGA GGTCAGCGAC AGCTGCGGCC GCTGGCTCGG ACTGGCCGCG
GCCGATCTGC TGGGCCGCAG GCCCGAGCAG GTGCTGGCGG GGCCGGGGGC CACGATCCCG
GGCTGGGAGC GGCTGCAGGA TCAGGCCCGG CGCCACGGCC GGGCCGGCAC CGAGGCGCTG
GTCCACGGCC ACGGCGGTCG GCCGCTCTGG TGCACGCTGG TGCTCGATGC CCTGCCCGCC
GCGCAGGGCG AGCCCGACAC CTGGCTGCTG ACGCTGGCCG ACATCACGCA GCAGCGCATC
CTCACCGAAC TGCAGGGGCC GGTGCTCGGC GCGCTGGTGC GCGATCGGCC GCTGGCCGAG
GTGATGGCGC TGGTCTGCAC GCAGGTCCAG ATCCTGGCGC CCGATGTGGT GGCCACGGTG
CTGGGCGTCG ATGACGACGG CCTGATCCGG CCGCTGGCCG GCCCGAGCAT CCCCGCCGAG
GTGTCGTGCC AGTTCGACGG TGCGCCGATC GGCCCCAAGG CGGGCTCCTG CGGCACCGCC
GCCTGGCGCG GCAGCCCGGT GGTGGTGACC GACATCGACA CCGATCCGCT CTGGGACGAC
TACCGGCACG TGGTGCAGCC GCTCGGCCTG CGCGCCTGCT GGTCGAGCCC GATCAAGAAC
GGCGAGGGCC GGGTGCTGGC CACGTTCGCG TTCTACTTCC GCGAACCGCG TGCACCGCAC
GGCCTGCACG AGCAGCTGGT CGAGATGAGC GTGCACCTGT GCACCCTGGC GCTCGAGCGC
GAGCGCAGCC ACGCCCACAT CCACCAGCTG GCCTATTACG ACGGCCTGAC CGGCCTGCCC
AACCGTGCGC TGCTGCAGGC CAACCTGGCA CGGGCGATCA CGCAGGCGCA ACAGGACGGC
ACGACGCTGG CCCTGCTGTT CATCGACCTC GACCGCTTCA AGGACGTCAA CGACAGCCAC
GGCCATGCGG TGGGCGACGA ACTGCTGCGC GAGGTGGCCC AGCGGCTGGC CGGCGAGGTG
CGCGATCGCA GCCTGGTCTG CCGCCTGGCG GGTGACGAGT TCGTCGTGGT GCTGCCGCAT
TGCGGCGTCG AGCAGGCCCG CCACACGGCC GAGCGGGTGC AGCAGGCGCT GGCCCGCCCG
ATCACCGTCG GCGACCTCGA CCTGACGACC GGCGCCTGCC TGGGCGTGGC CATGTACCCC
GACGACGGCA GCGACCTCGA CCGGCTGCTG CGCCACGCCG ATGCCGCGAT GTACCAGGCC
AAGAAGGACG GCCGCGGCGG CCTGCACTTC TACCGCGCCG AGATGAACCG CGCCGCAGAG
GACCGGCTGC GCCTGGCCGC CGATCTGCGT GCCGCCCTGC ATCGCGGCGG GCTGCAGCTG
CACTTCCAGC CGCAGGTGTG CCCGCCCGGC AAGACCCCCC GATCGCCGGC CGCGGGCCCG
GCGTCGATGT CGCTGTTCGG GGTCGAGGCG CTGCTGCGCT GGCGTCACCC GGTGCTGGGT
GACGTGTCAC CCGAGCGTTT CATCCCGGTC GCCGAAGAGG CGGGCCTGAT GGACGAGCTG
TCGAACTGGG TGCTCGAAGC CGCCTGCGCC CAGCTGGCCG GCTGGCGCGC CGACGGCATC
GACGTGCCGC GTGTGGCCGT CAACCTGTCG CCGCGCAACT TCCAGGATCC CGGCCTGCCG
GCGCGGGTGC GTCAGCTGCT GGATCGGCAC GGCCTGCGCG GCGATCAGCT GACGCTCGAA
CTGACCGAAT CGGCCTGGAT CGACCGCCGC GCCGACTCGC TCGACAAGCT GCGGGCGCTG
CAGGCGCTGG GCGTCGGGCT GGCGATGGAC GATTTCGGCA ACGGCCAGTC CAGCCTGAGC
CACCTGCATC GGCTGCCGCT GCGCCAGCTC AAGCTCGATC GCAGTTTCGT GCACGACATC
GAACACCTCG CGGTGGCGCA GACCCTGGCC GCGGCGATGC TGCACATCGG CGAGAGCCTC
GGCCTGATCG TGGTGGCCGA AGGCATCGAG ACCGCGGCGC AGGCCGCCTT CCTGATCGAG
CACGGCTGCC CGGTGCTGCA GGGCGATCGG TATGCGCAAT CGATGGCGGC CGAGCAGATC
GGCCCCTGGC TGGCCGGGCT GGCATCGATG GCGGCGGCGG ATGTCGGCGC CTCGCGCAGC
GATCACGGCA CCTGA
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| Protein sequence | MPRPAEEIRS DAVPAMSHPP DDPPASGRTG SPTPRTDRSA LLPALTRLFD DGPCAALVCG
ADGRITEVSD SCGRWLGLAA ADLLGRRPEQ VLAGPGATIP GWERLQDQAR RHGRAGTEAL
VHGHGGRPLW CTLVLDALPA AQGEPDTWLL TLADITQQRI LTELQGPVLG ALVRDRPLAE
VMALVCTQVQ ILAPDVVATV LGVDDDGLIR PLAGPSIPAE VSCQFDGAPI GPKAGSCGTA
AWRGSPVVVT DIDTDPLWDD YRHVVQPLGL RACWSSPIKN GEGRVLATFA FYFREPRAPH
GLHEQLVEMS VHLCTLALER ERSHAHIHQL AYYDGLTGLP NRALLQANLA RAITQAQQDG
TTLALLFIDL DRFKDVNDSH GHAVGDELLR EVAQRLAGEV RDRSLVCRLA GDEFVVVLPH
CGVEQARHTA ERVQQALARP ITVGDLDLTT GACLGVAMYP DDGSDLDRLL RHADAAMYQA
KKDGRGGLHF YRAEMNRAAE DRLRLAADLR AALHRGGLQL HFQPQVCPPG KTPRSPAAGP
ASMSLFGVEA LLRWRHPVLG DVSPERFIPV AEEAGLMDEL SNWVLEAACA QLAGWRADGI
DVPRVAVNLS PRNFQDPGLP ARVRQLLDRH GLRGDQLTLE LTESAWIDRR ADSLDKLRAL
QALGVGLAMD DFGNGQSSLS HLHRLPLRQL KLDRSFVHDI EHLAVAQTLA AAMLHIGESL
GLIVVAEGIE TAAQAAFLIE HGCPVLQGDR YAQSMAAEQI GPWLAGLASM AAADVGASRS
DHGT
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