Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lcho_0524 |
Symbol | ddl |
ID | 6162865 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Leptothrix cholodnii SP-6 |
Kingdom | Bacteria |
Replicon accession | NC_010524 |
Strand | + |
Start bp | 570652 |
End bp | 571641 |
Gene Length | 990 bp |
Protein Length | 329 aa |
Translation table | 11 |
GC content | 72% |
IMG OID | 641663273 |
Product | D-alanine--D-alanine ligase |
Protein accession | YP_001789564 |
Protein GI | 171057215 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG1181] D-alanine-D-alanine ligase and related ATP-grasp enzymes |
TIGRFAM ID | [TIGR01205] D-alanine--D-alanine ligase |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 36 |
Fosmid unclonability p-value | 0.860729 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGCGCCG TTGACGTCAA GGCGCTCGGC CGCGTCGCCG TCCTGATGGG CGGCAGCTCG GCCGAGCGCG AGATCTCGCT GATGAGCGGC GCGGGCGTGC TGCAGGCGCT GTTGAGCCAG GGCGTCGACG CGCATGCCTT CGACCCGGCC GAGCGCGAGC TGGCCGAGCT CAAGCACGAA GGCTACGCGC GCTGCTTCAT CGCGCTGCAT GGCCGCCACG GCGAAGACGG CACCGTGCAG GGCGCGCTCG AACTGCTCGG CATCCCGTAC ACCGGCTCGG GCGTGATGGC CTCGGCGATC GCGATGGACA AGGTCATGAC CAAGCGCATC TGGCTCGCCG AAGGCCTGCC GACGCCGCGT TACGTCTGGC TCGCCAGCGA CGACCAGGGC GCCGAGCGCG TCGGCCGTGT CAGCGCCGAG CTGGGCCTGC CGCTGATCGT CAAGCCGCCG CGCGAGGGCT CGTCGATCGG CGTGACCAAG GTCGTCGAGG CGGCGCAGGT GGGCGCTGCG GTCGCGCTGT CGGCCGGCTA CGACGCCGAC GTGCTGTGCG AAGCCTTCAT CGAGGGCGAG GAGCTGACCT GCCCGGTGCT GGGCGAAGGC GCCCATGCCG TGGCGCTGCC GGTGATCCGC ATCGTGCCGC CGGCGGCGGG TTACGACTAC CAGAACAAGT ACTTCACCGA CGAGGTGCAG TACCTCTGCC CGAGCGGGCT GTCGGCCGAG CTGGAGCGCG AGATCCAGCG CATCACGCTG GCGTCGTATC GCGCGCTCGG CTGCCGCGGC TGGGGTCGTG CCGACCTGAT GCTGCGTGCG GGCGATCAGC AGCCCTTCCT GCTGGAGATG AACACCTCGC CGGGCATGAC CGGCCACTCG CTGGTGCCGA TGTCCGCGCG TGCGTCGGGC ATCTCGTACG AGGCGCTGTG CCTGCAGCTG CTGGCCGCCG CCCGGCTCGA CAATCCGGCG CCGGCGCCGC TGTCATCGGC CGGCGGCTGA
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Protein sequence | MSAVDVKALG RVAVLMGGSS AEREISLMSG AGVLQALLSQ GVDAHAFDPA ERELAELKHE GYARCFIALH GRHGEDGTVQ GALELLGIPY TGSGVMASAI AMDKVMTKRI WLAEGLPTPR YVWLASDDQG AERVGRVSAE LGLPLIVKPP REGSSIGVTK VVEAAQVGAA VALSAGYDAD VLCEAFIEGE ELTCPVLGEG AHAVALPVIR IVPPAAGYDY QNKYFTDEVQ YLCPSGLSAE LEREIQRITL ASYRALGCRG WGRADLMLRA GDQQPFLLEM NTSPGMTGHS LVPMSARASG ISYEALCLQL LAAARLDNPA PAPLSSAGG
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