| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_0520 |
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| Symbol | |
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| ID | 6162861 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | + |
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| Start bp | 564960 |
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| End bp | 566813 |
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| Gene Length | 1854 bp |
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| Protein Length | 617 aa |
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| Translation table | 11 |
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| GC content | 74% |
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| IMG OID | 641663269 |
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| Product | UDP-N-acetylmuramoylalanine--D-glutamate ligase |
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| Protein accession | YP_001789560 |
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| Protein GI | 171057211 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0771] UDP-N-acetylmuramoylalanine-D-glutamate ligase |
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| TIGRFAM ID | [TIGR01087] UDP-N-acetylmuramoylalanine--D-glutamate ligase |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 31 |
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| Fosmid unclonability p-value | 0.302802 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACTTCC TCCGCGATCT GCCTGTGCTC GTGCTCGGCC TGGGTGACTC CGGCCTGGCG
ATGGCACGCT GGGCGCAGCG TTGTGGCGCC GCGCGCATCG TGGTGGCCGA CAGCCGCAGC
GCGCCGCCGC AGGCCGCCCG GCTGGCGTCG GACGTGCCGG CCGCCGAGCT GCGCTGCGGC
GCGTTCACGG CCGATCTGCT CGACGGCGTG CAGCTGGTGC TCAAGAGCCC GGGCCTGTCG
CCGCTCGACG CCGGCGTGGT GCCCTTGCTC GACGCCGCCG GTGAGCGCGG CGTCGTGGTG
CTCGGCGAGC TGGCGCTGTT CGCCCATGCA CTGGCCGACC TGAAAACCGC GCGTGGCTAC
GCCCCGAAGG TGCTGGCCAT CACCGGCACC AACGGCAAGA CCACCACCAC CGCGCTGACC
GCCTTGCTGG TCGAGCGCGC CGGCCTGCGC GTGGCGATGG CCGGCAACAT CGGCCCGACG
ATGCTCGACA CGCTCGGCGC CGCGCTCGAT CTGGAGCCGG CTGCGGCCGA GCTGATCGCC
GCCGCTGCCG TGCCGGATCC CGAGCCGTCC GACGAGATCG ATGCCGACGA GCAGGCCGAT
CTGGCCGCGC TCGATGGCGT CACGGCGGAC GAGGCCGACG TGGCCGACGT GGCCGTCGAT
GGTGTCGACA CGTCGGCCAT CGAGCCGGCT GCCGAGGAAT CCGCCGCCGA AGGCCCGTCG
CTCGACGACC TGATCGAAGG CGGCGGACCG CCGCCGCACC TGATCCCTTC GCCGCCGCCG
GCCCCGGTGT TCGAACACCT GCCGCAGGCC TGGGTGCTGG AGCTGTCGAG CTTCCAGCTC
GACGGCGTGC ACAACTTCGA GCCGACCGCG GCCGCCGTGC TCAACGTCAC CCAGGATCAC
CTCGACTGGC ACGGCGACAT GGCGGCCTAT GCGGCGGCCA AGGCGCGCAT CTTCGGCCGG
CAGGCGGTGA TGGTCATCAA CCGCGACGAC CCGGCCGTGC TGGCGATGAT CCCGCAGCCG
CCCGAGCCCG AAGTCGGCAA GTCCGGCAAG GTGCTGAAGG CGCGCGGCCC GCGCTGGCAG
CCGCGTCGCG TGGTGCGCTT CGGCCTCGAC CAGCCGCGTC AACCCGGCGA CTGGGGCCTG
GTGATCGAGC AGGGCATGGC CTGGCTGGTG CGCGCCCACG AGCGTGACGA CAGCGAGCCG
CGCACCCGCC GCGGCGCCGC GGTGATCGAC ACCGAGGTGA CGCTGCAGCG CCTGATGCCG
GCCGACGCGC TGCGCATCCG CGGTCGCCAC AACGCTGCCA ACGCGCTGGC CGCCCTGGCG
CTGGCCAGTG CCGCCGGCCT GCCGCTGGCG CCGATGCTGC ACGGCCTGCG CGAATACCGC
GGCGAGCCGC ACCGGGTCGA GTACCTGCTG ACGGTGGCCG GCGTCGACGC CTATGACGAC
AGCAAGGGCA CCAACGTCGG CGCCACCGTG GCCGCGCTGA CCGGGCTCGG CCCCGACAAG
GCGCCCGGCA AGCTGGTCGT GATCCTGGGC GGCGACGGCA AGGGCCAGGA TTTCAGCCCG
CTCGCCGCTG CCGTGGCCGC CCATGCGCGC GCGGTGGCGC TGATCGGCCG CGATGCGCGG
GCGATCGGCG CGGTGCTGGC GCCGCTGGTG GCCGACGGAC TGCCCGTCCA GAGCCACGAC
AGCCTCGAGG CGGCGACGCG CTGGTGTTTC GAGCAGGCCC GCAGCGGTGA CGCGGTGCTG
CTGAGCCCGG CCTGCGCCAG CCTCGACATG TTCCGCAACT ACGCCCACCG GGCGCAGGTG
TTTGCCGACA CGGTGGCGGC GATGGCCACC GAACACGGGG AGTTCGGCGC ATGA
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| Protein sequence | MNFLRDLPVL VLGLGDSGLA MARWAQRCGA ARIVVADSRS APPQAARLAS DVPAAELRCG
AFTADLLDGV QLVLKSPGLS PLDAGVVPLL DAAGERGVVV LGELALFAHA LADLKTARGY
APKVLAITGT NGKTTTTALT ALLVERAGLR VAMAGNIGPT MLDTLGAALD LEPAAAELIA
AAAVPDPEPS DEIDADEQAD LAALDGVTAD EADVADVAVD GVDTSAIEPA AEESAAEGPS
LDDLIEGGGP PPHLIPSPPP APVFEHLPQA WVLELSSFQL DGVHNFEPTA AAVLNVTQDH
LDWHGDMAAY AAAKARIFGR QAVMVINRDD PAVLAMIPQP PEPEVGKSGK VLKARGPRWQ
PRRVVRFGLD QPRQPGDWGL VIEQGMAWLV RAHERDDSEP RTRRGAAVID TEVTLQRLMP
ADALRIRGRH NAANALAALA LASAAGLPLA PMLHGLREYR GEPHRVEYLL TVAGVDAYDD
SKGTNVGATV AALTGLGPDK APGKLVVILG GDGKGQDFSP LAAAVAAHAR AVALIGRDAR
AIGAVLAPLV ADGLPVQSHD SLEAATRWCF EQARSGDAVL LSPACASLDM FRNYAHRAQV
FADTVAAMAT EHGEFGA
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