| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_0518 |
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| Symbol | |
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| ID | 6162489 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | + |
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| Start bp | 562312 |
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| End bp | 563781 |
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| Gene Length | 1470 bp |
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| Protein Length | 489 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 641663267 |
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| Product | UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase |
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| Protein accession | YP_001789558 |
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| Protein GI | 171057209 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0770] UDP-N-acetylmuramyl pentapeptide synthase |
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| TIGRFAM ID | [TIGR01143] UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 32 |
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| Fosmid unclonability p-value | 0.356226 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACACGC TGATGACCCT TGAACACGCC CACGCGCTGA TCGTGCGCCG GCAGCCCGCG
GCCCGGCTGG TCGGCGATGG CTGTCAGCCG ATCGCGCGCG TGCACAGCGA CACCCGCTCG
CTGCGCGCCG GCGACCTGTT TGTGGCGCTG CGCGGCGAGC GTTTCGACGC GCATGATTTC
CTGCCCCAGG CGCAGGCCGC GGGCGCCGTC GCGGCGATCG CCGAACGCGG CCTGGATGCG
TCCGGCATGC CCGGCATCGA GGTGCCCGAC AGCCTGCTGG CCCTGCAGGC GCTGGCCGCC
GGCTGGCGTG CCGAACACCT GCTGCCCGTC ATCGCCGTGA CCGGCAGCAA CGGCAAGACC
ACCGTCACGC AGATGATCGC GGCGATCCTG CGCGCCTGGC TGGGCGACGC CGCCCACGCC
ACCGCCGGCA ACTTCAACAA CCACATCGGC GTGCCGCTGA CGCTGCTGGC GCTGCACGCC
GGCCATCGCG CCGCGGTGGT CGAGCTGGGC ATGAACCACC CGGGCGAGAT CGCCGAGCTG
GCGCGCATCG CCCAGCCCAC CGTCGCGCTG GTCAACAACG CCCAGCGCGA ACACCAGGAG
TTCATGCAGA CGGTCGAGGC GGTGGCGCGC GAAAACGGTT GTGTCATCAG CGCCTTGCCG
GCCGACGGCG TGGCGGTGTT TCCGGCCGAC GACGACTACA CGCCGATCTG GCGCGAGCTG
GCGCAGCCGC GCCGGGTGCT GACCTTCGCG CTGGCCGAAG CCGGCGTGGC GGCCGACTGC
GTGGCGCAGG CCAGCTGGGC CGGCGATCAC TGGCAGGCAC GGTTCGACAC GCCGGCCGGG
TCGATCGACC TGGCGCTCGG CGTGGCTGGG CGGCACAACG TCAAGAACGC GCTCGCCGCC
TGCGCCTGCG CGCTGGCCGC CGGTTGCCCG CTCGACGCGG TGCAGCGTGG CCTGGCCGGT
TTTGCCGCGG TCAAGGGGCG CTCGCAGGTG TCGCTGCTGG ACTGGGGCGG CCGGCAGGTC
ACGCTGGTCG ACGACAGCTA CAACGCCAAC CCGGACTCGG TGCGTGCCGC CATCGAGGTG
CTGGCGGCCC TGCCGGCGCC GCGCTGGCTG CTGCTGGGCG ACATGGGTGA AGTCGGCGAC
CAGGGCCCGG CCTTTCATGC CGAGGTGGGC ACACTCGCCG CCCAGCGCGG CATCGATCAT
TTCTGGACCG CCGGGGTCTT GTGCGCCGAT GCGGCGCGCG CTTATGCCGA TGCCGTTCAT
GCGAGCCATG ATGCCACCTT GGTGGCTCAT CACGTGAGCT ACCACGGCGA CACCGCGGCG
CTGCTCCAGG CGATTGCCGC GGCCGGTGTG GCGTTGCCGC CAGCGGCCTC GGTGCTGGTC
AAGGGCTCGC GATTCATGGC GATGGAAAAA GCCGTGGCGG CGTTGCGCGA AGCCGCCCGC
CACGCTGGAG AACAACAAGA TGCTGGTTAG
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| Protein sequence | MNTLMTLEHA HALIVRRQPA ARLVGDGCQP IARVHSDTRS LRAGDLFVAL RGERFDAHDF
LPQAQAAGAV AAIAERGLDA SGMPGIEVPD SLLALQALAA GWRAEHLLPV IAVTGSNGKT
TVTQMIAAIL RAWLGDAAHA TAGNFNNHIG VPLTLLALHA GHRAAVVELG MNHPGEIAEL
ARIAQPTVAL VNNAQREHQE FMQTVEAVAR ENGCVISALP ADGVAVFPAD DDYTPIWREL
AQPRRVLTFA LAEAGVAADC VAQASWAGDH WQARFDTPAG SIDLALGVAG RHNVKNALAA
CACALAAGCP LDAVQRGLAG FAAVKGRSQV SLLDWGGRQV TLVDDSYNAN PDSVRAAIEV
LAALPAPRWL LLGDMGEVGD QGPAFHAEVG TLAAQRGIDH FWTAGVLCAD AARAYADAVH
ASHDATLVAH HVSYHGDTAA LLQAIAAAGV ALPPAASVLV KGSRFMAMEK AVAALREAAR
HAGEQQDAG
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