Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lcho_0516 |
Symbol | |
ID | 6162487 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Leptothrix cholodnii SP-6 |
Kingdom | Bacteria |
Replicon accession | NC_010524 |
Strand | + |
Start bp | 558930 |
End bp | 560774 |
Gene Length | 1845 bp |
Protein Length | 614 aa |
Translation table | 11 |
GC content | 70% |
IMG OID | 641663265 |
Product | peptidoglycan glycosyltransferase |
Protein accession | YP_001789556 |
Protein GI | 171057207 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0768] Cell division protein FtsI/penicillin-binding protein 2 |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 31 |
Fosmid unclonability p-value | 0.316691 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAGTGGC TGTCGCGCCT GTGGCCCGGC CGTGCGCCGG CCAACACCGC CCGGCGCTCG CCGCGGCAGC AGACGGCCGT GCGCCGCAAC ACGTCGCTCG GCTCCGGCCA CCTGCAGTAC GCCAGCAGCC CGCTGCTGGC GGCCAAGACG CCGCTGTGGC GCGCGCGCCT GGTCGTGCTC GGCGTCGGCG TGGGTTTTCT GGTGCTGCTG GGGCGTGCGG TCTACATCCA GGTGATCGGC ACCGAGTTCT ATCAGAAGCA GGGCGAGAGC CGCTACGCGC GCACCTTCGA GCTGCCGGCC AGCCGCGGCC GCATCACCGA TCGCCACGGC CAGATCCTGG CCGCCAGCGT GCCGGCGCCG TCGATCTGGG CGATCCCGAA GGATTTCAGG CCCGATGCGA AGCAGCAGCA GGCGCTGCTG CGCCTGCTGG GCATGACCTC GCGCGAGCTG GCCACGCGCC TGGCCGACAA CCCGAATTTC GTCTGGCTGC GCCGCCAGGT CGACGAGTCC GTCGCGGCGC AGGTCAAGGC GCTGGGCATC AAGGGCCTGC ACCAGCAGCG CGAGTTCCGC CGCCAGTATC CGGAAGGCGA GTCGGCGGCA CATGTGGTCG GTTTCACCAA CCTCGAAGAG CGCGGCCAGG AAGGCATCGA GCTGGCGTTC CAGAAAGAGC TCGAAGGCCG CGCCGGCAGC CGCAGCGTGG TGCGCGACCG GCTCGGCCGC ATCGTCGAGG ACATCGGCGA GAGCCGCGAG CCGGTCGACG GCAGCGATCT GGCGCTGGCG CTCGACTCCA AGGTGCAGTT CTTCGCCTAC CAGCGGGTGC GCGATGCCGT GCTCGAGCAC AACGCCAAGG CCGGCAGCGT GGTCGTGCTC GACGTGCTGA CCGGCGAGGT GCTGGCGCTG GCCAACTACC CGAGCTACGT GCCCGGCGAG CGCCAGGGGC TCAGCGGCGC GCAGCTGCGC AACCGCGCCG TCACCGACAC CTTCGAGCCC GGCTCGACGA TGAAACCGTT CATCGCCGCG CTCGCCTTGC AGACCGGCCG GGTCACGCCC GACACCGTGA TCCAGACGGC GCCCGGACGC ATCCACTTCG GCAGCGCGAC CATCTCCGAC TCGCATCCGC ACGGCCTGCT GTCGGTCGAG CAGGTGATCC AGAAGTCGAG CAACGTCGGC ACCGTCAAGA TGGCGATGCA GATGGAGCCG CGCGAGATGT GGGAGATGTT CAGCTCGGTG GGCATCGGCC AGAAACCGCA GCTGGCGTTC CCGGGCCTGG CCTCGGGCCG CCTGCGGCCG TACAAGAGCT GGCGGCCGGT CGAGCAGGCG ACCATGAGCT ACGGCTACGG CCTGTCGGTG TCGCTGCTGC AGCTGGCGCG CGCCTACACG GTGTTCGCCC GCGACGGTCA GCTGATGCCG GTGACGATGC TCAAGAACGA GGTGCCGGCT GCTGGCGTCC AGGTCTTCAG CCCCGAGGTG GCACGTTCGG TGCGCCACAT GCTCAACATG GCCGCCGCCC CCGGCGGCAC CGCCCCGAAG GCGCAGGCGA TCGGCTATTC GGTCGGCGGC AAGACCGGCA CCGCCCACAA GCAGGAGGGT GGCAGCTACG TCAGCAACAA GTACCGCGCC TGGTTCGTCG GCATCGCGCC GGTGAGCAAC CCGCGCATCG TGGTGGCGGT GATGGTCGAC GAGCCCGGCA ACGGCCGCTA TTTCGGTGGC GACGTGGCCG CGCCGGTGTT CAGCCAGGTG GTGCAGCAGT CGCTGCGCAT GCTCGGCGTG CCGCCCGACC TGGAGGTGCA GCCGCAGATC GTCGCGCGCG CCCAGGCGGT CAAGGCCGAA GAGGAGTCGT TCTGA
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Protein sequence | MKWLSRLWPG RAPANTARRS PRQQTAVRRN TSLGSGHLQY ASSPLLAAKT PLWRARLVVL GVGVGFLVLL GRAVYIQVIG TEFYQKQGES RYARTFELPA SRGRITDRHG QILAASVPAP SIWAIPKDFR PDAKQQQALL RLLGMTSREL ATRLADNPNF VWLRRQVDES VAAQVKALGI KGLHQQREFR RQYPEGESAA HVVGFTNLEE RGQEGIELAF QKELEGRAGS RSVVRDRLGR IVEDIGESRE PVDGSDLALA LDSKVQFFAY QRVRDAVLEH NAKAGSVVVL DVLTGEVLAL ANYPSYVPGE RQGLSGAQLR NRAVTDTFEP GSTMKPFIAA LALQTGRVTP DTVIQTAPGR IHFGSATISD SHPHGLLSVE QVIQKSSNVG TVKMAMQMEP REMWEMFSSV GIGQKPQLAF PGLASGRLRP YKSWRPVEQA TMSYGYGLSV SLLQLARAYT VFARDGQLMP VTMLKNEVPA AGVQVFSPEV ARSVRHMLNM AAAPGGTAPK AQAIGYSVGG KTGTAHKQEG GSYVSNKYRA WFVGIAPVSN PRIVVAVMVD EPGNGRYFGG DVAAPVFSQV VQQSLRMLGV PPDLEVQPQI VARAQAVKAE EESF
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