Gene Lcho_0516 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_0516 
Symbol 
ID6162487 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand
Start bp558930 
End bp560774 
Gene Length1845 bp 
Protein Length614 aa 
Translation table11 
GC content70% 
IMG OID641663265 
Productpeptidoglycan glycosyltransferase 
Protein accessionYP_001789556 
Protein GI171057207 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0768] Cell division protein FtsI/penicillin-binding protein 2 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones31 
Fosmid unclonability p-value0.316691 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAGTGGC TGTCGCGCCT GTGGCCCGGC CGTGCGCCGG CCAACACCGC CCGGCGCTCG 
CCGCGGCAGC AGACGGCCGT GCGCCGCAAC ACGTCGCTCG GCTCCGGCCA CCTGCAGTAC
GCCAGCAGCC CGCTGCTGGC GGCCAAGACG CCGCTGTGGC GCGCGCGCCT GGTCGTGCTC
GGCGTCGGCG TGGGTTTTCT GGTGCTGCTG GGGCGTGCGG TCTACATCCA GGTGATCGGC
ACCGAGTTCT ATCAGAAGCA GGGCGAGAGC CGCTACGCGC GCACCTTCGA GCTGCCGGCC
AGCCGCGGCC GCATCACCGA TCGCCACGGC CAGATCCTGG CCGCCAGCGT GCCGGCGCCG
TCGATCTGGG CGATCCCGAA GGATTTCAGG CCCGATGCGA AGCAGCAGCA GGCGCTGCTG
CGCCTGCTGG GCATGACCTC GCGCGAGCTG GCCACGCGCC TGGCCGACAA CCCGAATTTC
GTCTGGCTGC GCCGCCAGGT CGACGAGTCC GTCGCGGCGC AGGTCAAGGC GCTGGGCATC
AAGGGCCTGC ACCAGCAGCG CGAGTTCCGC CGCCAGTATC CGGAAGGCGA GTCGGCGGCA
CATGTGGTCG GTTTCACCAA CCTCGAAGAG CGCGGCCAGG AAGGCATCGA GCTGGCGTTC
CAGAAAGAGC TCGAAGGCCG CGCCGGCAGC CGCAGCGTGG TGCGCGACCG GCTCGGCCGC
ATCGTCGAGG ACATCGGCGA GAGCCGCGAG CCGGTCGACG GCAGCGATCT GGCGCTGGCG
CTCGACTCCA AGGTGCAGTT CTTCGCCTAC CAGCGGGTGC GCGATGCCGT GCTCGAGCAC
AACGCCAAGG CCGGCAGCGT GGTCGTGCTC GACGTGCTGA CCGGCGAGGT GCTGGCGCTG
GCCAACTACC CGAGCTACGT GCCCGGCGAG CGCCAGGGGC TCAGCGGCGC GCAGCTGCGC
AACCGCGCCG TCACCGACAC CTTCGAGCCC GGCTCGACGA TGAAACCGTT CATCGCCGCG
CTCGCCTTGC AGACCGGCCG GGTCACGCCC GACACCGTGA TCCAGACGGC GCCCGGACGC
ATCCACTTCG GCAGCGCGAC CATCTCCGAC TCGCATCCGC ACGGCCTGCT GTCGGTCGAG
CAGGTGATCC AGAAGTCGAG CAACGTCGGC ACCGTCAAGA TGGCGATGCA GATGGAGCCG
CGCGAGATGT GGGAGATGTT CAGCTCGGTG GGCATCGGCC AGAAACCGCA GCTGGCGTTC
CCGGGCCTGG CCTCGGGCCG CCTGCGGCCG TACAAGAGCT GGCGGCCGGT CGAGCAGGCG
ACCATGAGCT ACGGCTACGG CCTGTCGGTG TCGCTGCTGC AGCTGGCGCG CGCCTACACG
GTGTTCGCCC GCGACGGTCA GCTGATGCCG GTGACGATGC TCAAGAACGA GGTGCCGGCT
GCTGGCGTCC AGGTCTTCAG CCCCGAGGTG GCACGTTCGG TGCGCCACAT GCTCAACATG
GCCGCCGCCC CCGGCGGCAC CGCCCCGAAG GCGCAGGCGA TCGGCTATTC GGTCGGCGGC
AAGACCGGCA CCGCCCACAA GCAGGAGGGT GGCAGCTACG TCAGCAACAA GTACCGCGCC
TGGTTCGTCG GCATCGCGCC GGTGAGCAAC CCGCGCATCG TGGTGGCGGT GATGGTCGAC
GAGCCCGGCA ACGGCCGCTA TTTCGGTGGC GACGTGGCCG CGCCGGTGTT CAGCCAGGTG
GTGCAGCAGT CGCTGCGCAT GCTCGGCGTG CCGCCCGACC TGGAGGTGCA GCCGCAGATC
GTCGCGCGCG CCCAGGCGGT CAAGGCCGAA GAGGAGTCGT TCTGA
 
Protein sequence
MKWLSRLWPG RAPANTARRS PRQQTAVRRN TSLGSGHLQY ASSPLLAAKT PLWRARLVVL 
GVGVGFLVLL GRAVYIQVIG TEFYQKQGES RYARTFELPA SRGRITDRHG QILAASVPAP
SIWAIPKDFR PDAKQQQALL RLLGMTSREL ATRLADNPNF VWLRRQVDES VAAQVKALGI
KGLHQQREFR RQYPEGESAA HVVGFTNLEE RGQEGIELAF QKELEGRAGS RSVVRDRLGR
IVEDIGESRE PVDGSDLALA LDSKVQFFAY QRVRDAVLEH NAKAGSVVVL DVLTGEVLAL
ANYPSYVPGE RQGLSGAQLR NRAVTDTFEP GSTMKPFIAA LALQTGRVTP DTVIQTAPGR
IHFGSATISD SHPHGLLSVE QVIQKSSNVG TVKMAMQMEP REMWEMFSSV GIGQKPQLAF
PGLASGRLRP YKSWRPVEQA TMSYGYGLSV SLLQLARAYT VFARDGQLMP VTMLKNEVPA
AGVQVFSPEV ARSVRHMLNM AAAPGGTAPK AQAIGYSVGG KTGTAHKQEG GSYVSNKYRA
WFVGIAPVSN PRIVVAVMVD EPGNGRYFGG DVAAPVFSQV VQQSLRMLGV PPDLEVQPQI
VARAQAVKAE EESF