| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_0506 |
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| Symbol | gatA |
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| ID | 6162133 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | + |
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| Start bp | 548162 |
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| End bp | 549655 |
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| Gene Length | 1494 bp |
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| Protein Length | 497 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 641663255 |
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| Product | aspartyl/glutamyl-tRNA amidotransferase subunit A |
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| Protein accession | YP_001789546 |
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| Protein GI | 171057197 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0154] Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases |
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| TIGRFAM ID | [TIGR00132] glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, A subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 23 |
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| Fosmid unclonability p-value | 0.0104138 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCGAAC TGCATCAGCT CGACATCACC GAGCTCGCCG CCCTGCTCGA CGCCGGGAAG
GTCTCCAGCG TCGAACTGAC CCGCCACCAG CTCGCCCGCG TGGCGGTGCA CGAGTCGCTC
GGTGCCTTTC TGTGTGTCGA CGAAGACGTC GCGCTGGCCC AGGCCGGCGC GGCCGACGCC
TGGCGCGCGC GCGGCATCGG CGGTGCGGCG CACCGCCTGC TGGGCGTGCC GATCGCGCAC
AAGGACATCT TCGTCACGCG CGATTTCCCC AGCACCGCCG GCTCGAAGAT GCTCGAGGGC
TACCGCAGCC CGTTCGACGC CACCGTCGTC AGCCGCCTGT CGGCCGCCGG CGCGGTGACG
CTGGGCAAGC TCAACTGCGA CGAGTTCGCG ATGGGCGGCA GCAACGAGAA CTCGGCCTGG
TTCCCGGCCC GCAACCCCTG GGACACCGGC CGCATCACCG GCGGCTCGTC GGGCGGCAGC
GCCGCCGCGG TGGCGGCTCG CCTGGTGCCC GGTGCCACCG GCACCGACAC CGGCGGCTCG
GTGCGCCAGC CGGCCAGCTT CTGCGGCATC ACCGGCATCA AGCCGACCTA CGGCCGCTGC
TCGCGCTACG GCATGATCGC CTTCGCCTCC AGCCTCGACC AGGCCGGCCC GATGGCGCGC
AGCGCGCTCG ATTGCGCGCA CCTGCTGCAG GCCATGAGCG GCTTCGACCC GCGTGACGCC
ACCAGCGCCG AACAGGCCGT GCCCGATTTC GTGGCACAGA CCACCGCCTT GCGCGAAGGC
GCCACGGCCG ACCGGCCGCT CGCCGGCCTG CGCATCGGCT TGCCGAAAGA GTTCTTCGGC
GACGGTGTCG CCGCCGACGT GCTGGCCGCC ACCCGCGCCG CGCTGGCCGA GCTCGAGAAG
CTCGGCGCCA CGCTGGTGGA CGTGAGCTTG CCGCGCACTG AGCTGTCGAT TCCGGTGTAC
TACATCATCG CGCCGGCCGA GGCCAGCTCG AACCTGAGCC GCTTCGACGG CGTGCGCTAC
GGCCACCGCG CCGAGCAGTA CAAGGACCTG TCGGAGATGT ACAGCAAGAG CCGCAGCGAA
GGCTTCGGCG CCGAGGTCAA GCGCCGCATC ATGATCGGCG CCTACGTGCT CTCGCACGGC
TACTACGACG CCTACTACCT GCAGGCGCAG AAGCTGCGCC GCATGATCGC CGACGACTTC
CAGGCGGCCT TCACGCAGTG CGACCTGATC GCCGGCCCGG TGGCGCCGAC CGTGGCGCGA
CCGCTCGGCA GCCAGAGCGA TCCGGTGGCC GAGTACCTGG CCGACATCTT CACGCTGCCC
GCCAGCTTGG CCGGCCTGCC CGGCATCAGC GTGCCGGCCG GCAGCGGAGA AGCCGGCCTG
CCGGTGGGCC TGCAGCTGAT CGGCAACTAC TGGCGCGAAG GCGCGCTGCT GCACGCCGGC
CACGCCTTCC AGCAGGCCAC CGACTGGCAT CGGCGCTCGC CCGCAGCGGC TTGA
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| Protein sequence | MTELHQLDIT ELAALLDAGK VSSVELTRHQ LARVAVHESL GAFLCVDEDV ALAQAGAADA
WRARGIGGAA HRLLGVPIAH KDIFVTRDFP STAGSKMLEG YRSPFDATVV SRLSAAGAVT
LGKLNCDEFA MGGSNENSAW FPARNPWDTG RITGGSSGGS AAAVAARLVP GATGTDTGGS
VRQPASFCGI TGIKPTYGRC SRYGMIAFAS SLDQAGPMAR SALDCAHLLQ AMSGFDPRDA
TSAEQAVPDF VAQTTALREG ATADRPLAGL RIGLPKEFFG DGVAADVLAA TRAALAELEK
LGATLVDVSL PRTELSIPVY YIIAPAEASS NLSRFDGVRY GHRAEQYKDL SEMYSKSRSE
GFGAEVKRRI MIGAYVLSHG YYDAYYLQAQ KLRRMIADDF QAAFTQCDLI AGPVAPTVAR
PLGSQSDPVA EYLADIFTLP ASLAGLPGIS VPAGSGEAGL PVGLQLIGNY WREGALLHAG
HAFQQATDWH RRSPAAA
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