Gene Lcho_0503 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_0503 
Symbol 
ID6162130 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand- 
Start bp545475 
End bp546413 
Gene Length939 bp 
Protein Length312 aa 
Translation table11 
GC content73% 
IMG OID641663252 
Productrod shape-determining protein MreC 
Protein accessionYP_001789543 
Protein GI171057194 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG1792] Cell shape-determining protein 
TIGRFAM ID[TIGR00219] rod shape-determining protein MreC 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones22 
Fosmid unclonability p-value0.00353407 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGCCGCTGG GCACACTCGA TCGCTCACCC CCACCGTTCT TCCGCCAGGG CCCTTCGGCG 
CTGACGCGGC TGGTTTTCTT CGCCTCGCTG GCGGTGTTCC TGATGGCGGC CGACACCCGC 
CTGGGCCTGA CCGGCCCGCT GCGCACGGCC GCCGCGGTGG CGCTGCACCC GGTCGAGCGC 
GCCCTGCTGG CGCCGGTCGA TGCGCTGAGC ACCGTGGGCG CCTATTTCGA CGGCATCACG 
GTGGCGCGCC AGCAGGCCGA CGCCGCACAG GCGCGACTCA CCCAGCAGGC CGAGCGCACG 
CTGCAGGTCG ATCGCCTGCT GCAGGAGAAC ACCCGGCTGC GCGCCCTGCT CGAACTGCGC 
GCCGGCCTGA CCTACCGCAG CCACGCCGCC GAGATCCTCT ACGACGCCGC CGACCCGTAC 
ACCCGCAAGG TCGTGATCGA CCGCGGCGAG AACGTCGGCA TCCTGCGCGG CTCGCCGGTG 
ATCAACGACG CCGGCGTGCT CGGCCAGGTC ACGCGGATCT ACCCGCTGAC CGCCGAGGTG 
ACGCTGCTGA TCGACCGCGA CGCGGCCATC CCGGTGCTCA ACACCCGCAC GCAACTGCGC 
AACGTCGCCT TCGGCGATCC GGACAGCGCC GGCATGGAGC TGCGCTACGC CGCCGCCAAC 
ACCGACGTGA AGGTCGGCGA CGTGCTCAGC ACCTCGGGCC TGGACGGCGT CTATCCGCCC 
GGCCTGCCGG TGGCGCGGGT GGCAAGCCTG GAGCGGCGCA CCCAGACCGA CTTCGCCCGC 
ATCGTGCTGC AGCCGGTGGC GCAGGCCGAC GGCGTGCGCC ATGTGCTGGT GCTCGACCCG 
ATGTCCACCC AGTTGCCGGT CCGCCCCGAG GCCGCCGCCT CGGCGGCGGG CCGCGACAAG 
GACGCCCTGA GCCTGCGCAA GTCGACCCCC AGGCGCTGA
 
Protein sequence
MPLGTLDRSP PPFFRQGPSA LTRLVFFASL AVFLMAADTR LGLTGPLRTA AAVALHPVER 
ALLAPVDALS TVGAYFDGIT VARQQADAAQ ARLTQQAERT LQVDRLLQEN TRLRALLELR 
AGLTYRSHAA EILYDAADPY TRKVVIDRGE NVGILRGSPV INDAGVLGQV TRIYPLTAEV 
TLLIDRDAAI PVLNTRTQLR NVAFGDPDSA GMELRYAAAN TDVKVGDVLS TSGLDGVYPP 
GLPVARVASL ERRTQTDFAR IVLQPVAQAD GVRHVLVLDP MSTQLPVRPE AAASAAGRDK 
DALSLRKSTP RR