Gene Lcho_0490 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_0490 
Symbol 
ID6160356 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand
Start bp531100 
End bp532614 
Gene Length1515 bp 
Protein Length504 aa 
Translation table11 
GC content67% 
IMG OID641663239 
Productputative transcriptional regulator 
Protein accessionYP_001789530 
Protein GI171057181 
COG category[K] Transcription 
COG ID[COG2865] Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones26 
Fosmid unclonability p-value0.0362004 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGACCGAAG GCGCCAAGAA ACTCGACCTC CGCTCGCTCG GCGACCTCTC GCAACTCGTC 
GAGACGGTCA CGCTGGAATG CAAGCTCGCG CAGGGCGAGG ACGGGCAGGG CGCCCTGCCC
AAGGACTTCT GGCCGACCTA CTCGGCGATG GCGAACAGCC ACGGCGGGTT GCTGCTGCTG
GGTGTGCGTG AGCGCCATGG CCGGTTCAGC GTGGCCGGTG TGCCCGATGC GGACAAGGTG
CGGCGCGACC TGTTCAACAA CCTCAACAAT CCGGGCAAGG TCAGCGCCAA TCTGCTCGGT
GAAGACGATG TGCAGGCGCT GATGCTGGAG GGCCGGACGG TACTGGCCGT GCAGATCCCG
CAGGCGCCGC GCAAGCTGCG GCCGATCTAT CTGAACGGCC AGCCGCTGGG CCACACCTGG
CGCCGGCTGC ACGACGGCGA CCGGCTCTGC GATGTCGAGA CCGTCAAGCG CATGCTGGCC
GAACAGCTCG AAGACAGCCG CGACACCCGC CTGCTGAACC GCTTCGGCCT GCCGGATCTG
GATCCTGAAA GCCTGCGCGC TTACCGTCAG ATGTTCGCGG TCGTGCGGCC CGATCACCCC
TGGAACGCAC CCGACGACAC CGCCTTCCTG AAGTTGATCG GCGGCTGGCG TGACGACCGC
GACAGCGGCG ATAGCGGCCT GACCCTGGCC GGGCTGCTGA TGTTCGGCCA GTGGCCCAGC
ATCAGCGAGG CCGCCCCGCT GTACTTCGTC GATTACCAGG AACAGACCGA CGCCTCTGAC
GCGGCCACGC GCTGGCTCGA CCGGCTGGTT CCCGATGGCA CCTGGTCTGG CAACCTGTTC
GACTTCTATC GCCGCGTGAT CCGAAAGCTC GGTGCCGACC TGAAGGTGCC GTTCATGCTC
AAGGGCGACA CGCGCATCGA CGACACGCCC CAGCACCAGG CGCTGCGCGA GGCGCTGGTC
AACACGCTGG TGCATGCCGA CTACAACGAT CGGGCTTCGG TGCGCATCGT CAAGCGGCCG
TCCGGTTTCG AGTTCCGCAA CCCGGGTGCG CTGCGCATTC CGGCCGAGCA GGCGCTGCAC
GGCGGGGTGA GCGACTGCCG CAACCGCACC CTCCAGCAGA TGTTCCTGAT GCTCAACCTG
GGCGAGCGCG CAGGCTCCGG CCTGCCGCGT ATCCGCGCTG GCTGGGACGG CGACGGCCGC
ACGTTGACGT TGCACGACGA TTTCGAGCCC TACGACCACA CCGTGCTGAC GATGAGTTGG
GGGTCATCGA GGGCAGCGAT TCGCCGGGCG CAGGTTGAAA CGCCAGGGAA AACGCCAGGG
AAAACGCCAG GGAAAACGCC AGATCTGGTT TTGCACGCCC TCCAAGCCGA CCCACAGGCC
ACGGTGCCGA CGCTTGCGCT GCAACTGGGC AAATCCGAAA GCGCCATCCT GCGTGTGATC
CGCAAGCTGC GCGAAGAGGG CCGCCTGCGC CGCATCGGCC CTGACAAGGG CGGCCACTGG
GAGGTGGCGG TGTGA
 
Protein sequence
MTEGAKKLDL RSLGDLSQLV ETVTLECKLA QGEDGQGALP KDFWPTYSAM ANSHGGLLLL 
GVRERHGRFS VAGVPDADKV RRDLFNNLNN PGKVSANLLG EDDVQALMLE GRTVLAVQIP
QAPRKLRPIY LNGQPLGHTW RRLHDGDRLC DVETVKRMLA EQLEDSRDTR LLNRFGLPDL
DPESLRAYRQ MFAVVRPDHP WNAPDDTAFL KLIGGWRDDR DSGDSGLTLA GLLMFGQWPS
ISEAAPLYFV DYQEQTDASD AATRWLDRLV PDGTWSGNLF DFYRRVIRKL GADLKVPFML
KGDTRIDDTP QHQALREALV NTLVHADYND RASVRIVKRP SGFEFRNPGA LRIPAEQALH
GGVSDCRNRT LQQMFLMLNL GERAGSGLPR IRAGWDGDGR TLTLHDDFEP YDHTVLTMSW
GSSRAAIRRA QVETPGKTPG KTPGKTPDLV LHALQADPQA TVPTLALQLG KSESAILRVI
RKLREEGRLR RIGPDKGGHW EVAV