Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lcho_0490 |
Symbol | |
ID | 6160356 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Leptothrix cholodnii SP-6 |
Kingdom | Bacteria |
Replicon accession | NC_010524 |
Strand | + |
Start bp | 531100 |
End bp | 532614 |
Gene Length | 1515 bp |
Protein Length | 504 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 641663239 |
Product | putative transcriptional regulator |
Protein accession | YP_001789530 |
Protein GI | 171057181 |
COG category | [K] Transcription |
COG ID | [COG2865] Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 26 |
Fosmid unclonability p-value | 0.0362004 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGACCGAAG GCGCCAAGAA ACTCGACCTC CGCTCGCTCG GCGACCTCTC GCAACTCGTC GAGACGGTCA CGCTGGAATG CAAGCTCGCG CAGGGCGAGG ACGGGCAGGG CGCCCTGCCC AAGGACTTCT GGCCGACCTA CTCGGCGATG GCGAACAGCC ACGGCGGGTT GCTGCTGCTG GGTGTGCGTG AGCGCCATGG CCGGTTCAGC GTGGCCGGTG TGCCCGATGC GGACAAGGTG CGGCGCGACC TGTTCAACAA CCTCAACAAT CCGGGCAAGG TCAGCGCCAA TCTGCTCGGT GAAGACGATG TGCAGGCGCT GATGCTGGAG GGCCGGACGG TACTGGCCGT GCAGATCCCG CAGGCGCCGC GCAAGCTGCG GCCGATCTAT CTGAACGGCC AGCCGCTGGG CCACACCTGG CGCCGGCTGC ACGACGGCGA CCGGCTCTGC GATGTCGAGA CCGTCAAGCG CATGCTGGCC GAACAGCTCG AAGACAGCCG CGACACCCGC CTGCTGAACC GCTTCGGCCT GCCGGATCTG GATCCTGAAA GCCTGCGCGC TTACCGTCAG ATGTTCGCGG TCGTGCGGCC CGATCACCCC TGGAACGCAC CCGACGACAC CGCCTTCCTG AAGTTGATCG GCGGCTGGCG TGACGACCGC GACAGCGGCG ATAGCGGCCT GACCCTGGCC GGGCTGCTGA TGTTCGGCCA GTGGCCCAGC ATCAGCGAGG CCGCCCCGCT GTACTTCGTC GATTACCAGG AACAGACCGA CGCCTCTGAC GCGGCCACGC GCTGGCTCGA CCGGCTGGTT CCCGATGGCA CCTGGTCTGG CAACCTGTTC GACTTCTATC GCCGCGTGAT CCGAAAGCTC GGTGCCGACC TGAAGGTGCC GTTCATGCTC AAGGGCGACA CGCGCATCGA CGACACGCCC CAGCACCAGG CGCTGCGCGA GGCGCTGGTC AACACGCTGG TGCATGCCGA CTACAACGAT CGGGCTTCGG TGCGCATCGT CAAGCGGCCG TCCGGTTTCG AGTTCCGCAA CCCGGGTGCG CTGCGCATTC CGGCCGAGCA GGCGCTGCAC GGCGGGGTGA GCGACTGCCG CAACCGCACC CTCCAGCAGA TGTTCCTGAT GCTCAACCTG GGCGAGCGCG CAGGCTCCGG CCTGCCGCGT ATCCGCGCTG GCTGGGACGG CGACGGCCGC ACGTTGACGT TGCACGACGA TTTCGAGCCC TACGACCACA CCGTGCTGAC GATGAGTTGG GGGTCATCGA GGGCAGCGAT TCGCCGGGCG CAGGTTGAAA CGCCAGGGAA AACGCCAGGG AAAACGCCAG GGAAAACGCC AGATCTGGTT TTGCACGCCC TCCAAGCCGA CCCACAGGCC ACGGTGCCGA CGCTTGCGCT GCAACTGGGC AAATCCGAAA GCGCCATCCT GCGTGTGATC CGCAAGCTGC GCGAAGAGGG CCGCCTGCGC CGCATCGGCC CTGACAAGGG CGGCCACTGG GAGGTGGCGG TGTGA
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Protein sequence | MTEGAKKLDL RSLGDLSQLV ETVTLECKLA QGEDGQGALP KDFWPTYSAM ANSHGGLLLL GVRERHGRFS VAGVPDADKV RRDLFNNLNN PGKVSANLLG EDDVQALMLE GRTVLAVQIP QAPRKLRPIY LNGQPLGHTW RRLHDGDRLC DVETVKRMLA EQLEDSRDTR LLNRFGLPDL DPESLRAYRQ MFAVVRPDHP WNAPDDTAFL KLIGGWRDDR DSGDSGLTLA GLLMFGQWPS ISEAAPLYFV DYQEQTDASD AATRWLDRLV PDGTWSGNLF DFYRRVIRKL GADLKVPFML KGDTRIDDTP QHQALREALV NTLVHADYND RASVRIVKRP SGFEFRNPGA LRIPAEQALH GGVSDCRNRT LQQMFLMLNL GERAGSGLPR IRAGWDGDGR TLTLHDDFEP YDHTVLTMSW GSSRAAIRRA QVETPGKTPG KTPGKTPDLV LHALQADPQA TVPTLALQLG KSESAILRVI RKLREEGRLR RIGPDKGGHW EVAV
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