| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_0487 |
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| Symbol | |
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| ID | 6162093 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | - |
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| Start bp | 526855 |
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| End bp | 528555 |
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| Gene Length | 1701 bp |
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| Protein Length | 566 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 641663236 |
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| Product | TPR repeat-containing protein |
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| Protein accession | YP_001789527 |
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| Protein GI | 171057178 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3063] Tfp pilus assembly protein PilF |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 35 |
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| Fosmid unclonability p-value | 0.679539 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGGGCGACT GGCTGCTGCA AGCAGGTCGT CATGACGAGG CCGAATCGGC CTACCGCAAG
GCCCTGCAGA TCAAACCCTT GCATGCACGC GCACAAGAGG GGCTCGGGCT GGTGCTTCTG
CGTATCGGTC GTCTCGAAGA AGCCTTCCTG CACCTCGAAG CTGCCCACAA GGTCGAGCCG
GACAACGCCG AGATCCTGAC GCACTGGGGC CTGGTTGATC TGGAAATGGG CAACCTCGGC
AACGCCGCCG GCAAGTTCCA CCGCGCCATC GAGCGCGATC CACGCAACCC GCACGCATGG
CACAACCTGG GCCTGGTGGC CCTGAAACAA GGCCAGGTCG ACACCAGCAT CGAGCTGCTG
CGCAAGGCAA TCGAGATTCG CCCGCAGCAT GGCTTGGCAT ACAGCAACCT GGCGATGGCG
CTGCGCCGCG CTGAACGCCT CGATGACGCC CTGGACGCGG CCCGCAAGGC CACCGAGTAC
AAGGCAGACA ACGCGCGGGT CTGGGTGGTG CTCGCAGATG TGCAGATGAA TCTGGGCGAC
TTCGATGCCG CCGGCCAGTC GCTCGAACGC GCGACGGCCA TCGATCCCCA GCACGTGGGC
ACATTTGTCG GCTTGGGCAA ACGGCACGCC GCCACCGGCG ACCCCACGCG CAGCCGCGAG
GCCTACACCC GGGCACTGCA ACTCAACCCC GACAGCGCCG ACGCCCGAGG GGGGCTCGGC
GAACTGGAGC TCCTGCTGGG CCAGTGGTCG ACCGCCTGGG ATCTCTACGA AGCACGCCGC
CGGGTCGAGG GCACGCCGGT GCGGCCCTAT CCGTTCAAGC CATGGCAAGG CGAAGACCTG
CAGCAACGCC ACATCCTTGT CCACGCCGAG CAGGGCCTGG GCGACATCAT CCTGTTCGCC
TCCTGCCTGC CCCAACTGCA AGCACTGGGT GGACAGTGCA CGATCGAGGT CCGCTCGCGC
ATGCAGGCCC TGTTCGCACG CTCGTTCCCG CAGGCGCGGG TGATCGGCCG CGCAGCCAAC
GCCGAGTTGC TCGACTGGCC AGCAGAGCTA CCTGCGTTCG ATTACGAGAT CCCGTTCGGC
TCGCTGCCGC GCTGGTTCCG CGCCAGGGCC ACCGACTTTC CCGCCCACCA GGGCTATCTG
GTGGCTGACG CCGCGCGCGT GCAGACCTGG CGCGACAAGC TCGCCCCCGG AGGCAGGCCC
ACAGTCGGCA TCGCGTGGCG CGGCGGCATG GCCGCCACAT CCAAGCTGCA ACGTTCGCTC
GAACTCAAGG CACTGGTGAG CGCCCTCGCG CCGACCGGTG TCCAACTGGT GTGCCTGCAG
TACGGGAACG TCGACGCCGA ACTGGAGCAA GTGCGATCCG AGTTGGGTGT GCACATCGAC
CCGGGGGTCT CGGGCTTCGG CGATCTCGAC GACCTGGCAG CATTGACGCA GGCCTGCGAT
CGGATCGTGA CGGTGTGCTC GACCCAAGCA CACCTGACCG GCGCCCTTGG CAAGCCCGGT
CTGGTGCTGG TACCCAGCAA TCCCAGTTGG CGCTATCTGC ATACGGGCAC GTCGATGCCC
TGGTATCCAA GCCTGCAACT CGTCCGGCAG CAGCAGCCCG GCGATTGGAG CGCCGTGCTC
ACTCAAGCGC AGTCGTGGGT GACATCGCAG ACAGCAGCCA GCCATTCGAT AGCAGACGCC
CCGTCTGGCG ACGCGCTGTG A
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| Protein sequence | MGDWLLQAGR HDEAESAYRK ALQIKPLHAR AQEGLGLVLL RIGRLEEAFL HLEAAHKVEP
DNAEILTHWG LVDLEMGNLG NAAGKFHRAI ERDPRNPHAW HNLGLVALKQ GQVDTSIELL
RKAIEIRPQH GLAYSNLAMA LRRAERLDDA LDAARKATEY KADNARVWVV LADVQMNLGD
FDAAGQSLER ATAIDPQHVG TFVGLGKRHA ATGDPTRSRE AYTRALQLNP DSADARGGLG
ELELLLGQWS TAWDLYEARR RVEGTPVRPY PFKPWQGEDL QQRHILVHAE QGLGDIILFA
SCLPQLQALG GQCTIEVRSR MQALFARSFP QARVIGRAAN AELLDWPAEL PAFDYEIPFG
SLPRWFRARA TDFPAHQGYL VADAARVQTW RDKLAPGGRP TVGIAWRGGM AATSKLQRSL
ELKALVSALA PTGVQLVCLQ YGNVDAELEQ VRSELGVHID PGVSGFGDLD DLAALTQACD
RIVTVCSTQA HLTGALGKPG LVLVPSNPSW RYLHTGTSMP WYPSLQLVRQ QQPGDWSAVL
TQAQSWVTSQ TAASHSIADA PSGDAL
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