Gene Lcho_0481 details

Gene Information

• Locus tag: Lcho_0481
• Symbol: holA
• ID: 6162099
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Leptothrix cholodnii SP-6
• Kingdom: Bacteria
• Replicon accession: NC_010524
• Strand: +
• Start bp: 518987
• End bp: 520075
• Gene Length: 1089 bp
• Protein Length: 362 aa
• Translation table: 11
• GC content: 73%
• IMG OID: 641663230
• Product: DNA polymerase III subunit delta
• Protein accession: YP_001789521
• Protein GI: 171057172
• COG category: [L] Replication, recombination and repair
• COG ID: [COG1466] DNA polymerase III, delta subunit
• TIGRFAM ID: [TIGR01128] DNA polymerase III, delta subunit

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: 53
• Fosmid unclonability p-value: 1
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

GTGCAACTGC GCTCCGATCA GCTCGGCGCC GCCCTGCAGC GCGGCTTGCG CCCGCTCTAC 
GTGATCCACG GCGACGAGCC GCTGCTGGCG CAGGAAGCCG CCGACCTGAT CCGCGCCGCC 
GCCCGCAAGG CCGGCCACAC CGAGCGCAGC GTGTACACCG TCGCCGGTGC GCATTTCGAC 
TGGTCGGGCC TGCTCGGCGA GGCCCAGGCG CTGAGCCTGT TCGCCGACAA GCGACTGATC 
GAGATCCGCA TCCCCGGCGG CAAGCCCGGC AAGGACGGCT CGGAGGCGCT GCAGCGTTAC 
GTCGAGACGC TGTCGGACGA CAACATCACG CTGATCGTGC TGCCGCGGCT GGACCGCACC 
CAGCTCGCCA GCGCCTGGTT CACCGCGCTC GACGGCGCCG GTGCGAGCGT GCGGGTCGAC 
CCGATCGAGC GCCGCGCGCT GCCGCAGTGG ATCGCCCAGC GGCTGGCGGC GCAGCAGCAG 
CGCGTCGAGG ACGGCGAGCC CGGCCAGCGC TGCCTGGCGT TTTTTGCCGA CTGCATCGAG 
GGCAACCTGT TGGCCGCGCA CCAGGAGATC AGCAAGCTCG GGCTGCTCCA TCCGCCGGGC 
GTGCTGACCT TCGAGCAGGT CGAGGGCGCG GTGCTGAACG TCGCGCGCTA CGACGTCTTC 
AAGCTCGGCG AGTCGGTGCT GGCCGGCCAG GTGGCGCGCG CGCTGCGCAT GCTCGAGGGC 
CTGCAGGCCG AGGGCGAAGC CGCCGTGCTG GTGCACTGGA CCTTGAGCGA AGACCTGCGC 
TCGCTCGCGC GCGTGCAGGC GGCGCTGCAG CAGGGCCGGC CGCTGCCGAT GGCCTTGCGC 
GAGGCGCGGG TCTGGGGCGT CAAGGAAAAG CTCTTCGAGC GCATCGTGCC CGGCCTGTCC 
ACCGAGCGGC TGGCCGAGCT GATCGCCGCC GCCCACCTGT GCGACGGCAT CGTCAAGGGC 
CTGCGCGCAC CGGGCTGGCC GCAGGATCCG TGGGCCGCCT TGCAGCGCCT GCTGCTGATG 
ACCATCGACG CGCTGCCGGG GCAGGGCGGC GGCGCCAAGA CCGCCGCGCG GCTGGCCCTG 
CGCGCCTGA 

 

Protein sequence

MQLRSDQLGA ALQRGLRPLY VIHGDEPLLA QEAADLIRAA ARKAGHTERS VYTVAGAHFD 
WSGLLGEAQA LSLFADKRLI EIRIPGGKPG KDGSEALQRY VETLSDDNIT LIVLPRLDRT 
QLASAWFTAL DGAGASVRVD PIERRALPQW IAQRLAAQQQ RVEDGEPGQR CLAFFADCIE 
GNLLAAHQEI SKLGLLHPPG VLTFEQVEGA VLNVARYDVF KLGESVLAGQ VARALRMLEG 
LQAEGEAAVL VHWTLSEDLR SLARVQAALQ QGRPLPMALR EARVWGVKEK LFERIVPGLS 
TERLAELIAA AHLCDGIVKG LRAPGWPQDP WAALQRLLLM TIDALPGQGG GAKTAARLAL 
RA