| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_0473 |
|---|
| Symbol | |
|---|
| ID | 6162946 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Leptothrix cholodnii SP-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010524 |
|---|
| Strand | + |
|---|
| Start bp | 511607 |
|---|
| End bp | 512584 |
|---|
| Gene Length | 978 bp |
|---|
| Protein Length | 325 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 641663222 |
|---|
| Product | HPr kinase/phosphorylase |
|---|
| Protein accession | YP_001789513 |
|---|
| Protein GI | 171057164 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG1493] Serine kinase of the HPr protein, regulates carbohydrate metabolism |
|---|
| TIGRFAM ID | [TIGR00679] Hpr(Ser) kinase/phosphatase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 60 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGAAACCGA CCGTCATCAG CGCCGATGCC CTGTTCGACG CCCATCGTGC GGCGCTCAAG
TGGGAATGGA TCGCCGGCCA CGCGCACCCC GAGCGGCGTT TCGATGAAGT CGCCGTGCGC
GATGCGCAGT CTGCAGCCGA TCTGGTCGGC TACCTCAACT ACATCCATCC TTACCGCGTG
CAGATCGTCG GTCGCCGCGA GGTGCGTTAC CTGCAGCCTG GCGACGCAAG TGGCGACAAC
CCGGTCGAAC TGCAAGAAAA GCGCATCTCG CGCATCGTGA CGCTCGAGCC GCCGGTCCTG
GTGGTCGCCG ACGGCTGCAC GCCGCCCGAC CGGCTGGTGG CGATGTGCGA GCGGGCCGAC
ATCCCGCTGT TCTGCACCGA GGACTCCGCC GGCCACGTGA TCGACGTGCT GCGCGGCTAC
CTCAGCCAGC ATTTCGCCGA ACGCACCTCG CGTCACGGCG TGTTCATGGA CATCCTCGGT
CTCGGCGTGC TGCTCACCGG CGAGTCGGGC CTGGGCAAGA GCGAACTCGG CCTGGAACTG
ATCTCGCGCG GCCACGGCCT GGTGGCCGAC GACGTGGTCG ATCTGTTCCG CGTCTCGCAG
GCCGCCATCG AAGGGCGCTG CCCCGAACTG CTGCGCAACC TGCTCGAGGT GCGCGGCATC
GGCCTGCTCG ACATCCGCGC CATCTTTGGC GAGACGGCGG TGCGCCGCAA GATGCGGCTC
AAGCTGATCG TGCACCTGGT GCGCAAGGAA ACGCTCGACC GCGACTTCGA GCGGCTGCCC
TACGAGCCGC TGTTCGAGGA CATCCTCGGC ATGCCGGTGC GCAAGGTCGT GATCGCCGTC
GATGCCGGCC GCAACCTGGC CGTGCTGGTC GAGGCGGCGG TGCGCAACAC CGTGCTGCAG
CTGCGTGGCA TCGACACCTA CCGCGACTTC ATCCAGCGCC ACCGCGACCT GATGGACAGC
GGCGACTCCG GTCTCTGA
|
|---|
| Protein sequence | MKPTVISADA LFDAHRAALK WEWIAGHAHP ERRFDEVAVR DAQSAADLVG YLNYIHPYRV
QIVGRREVRY LQPGDASGDN PVELQEKRIS RIVTLEPPVL VVADGCTPPD RLVAMCERAD
IPLFCTEDSA GHVIDVLRGY LSQHFAERTS RHGVFMDILG LGVLLTGESG LGKSELGLEL
ISRGHGLVAD DVVDLFRVSQ AAIEGRCPEL LRNLLEVRGI GLLDIRAIFG ETAVRRKMRL
KLIVHLVRKE TLDRDFERLP YEPLFEDILG MPVRKVVIAV DAGRNLAVLV EAAVRNTVLQ
LRGIDTYRDF IQRHRDLMDS GDSGL
|
|---|
| |