| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_0462 |
|---|
| Symbol | |
|---|
| ID | 6160561 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Leptothrix cholodnii SP-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010524 |
|---|
| Strand | + |
|---|
| Start bp | 501876 |
|---|
| End bp | 503195 |
|---|
| Gene Length | 1320 bp |
|---|
| Protein Length | 439 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 641663211 |
|---|
| Product | amine oxidase |
|---|
| Protein accession | YP_001789502 |
|---|
| Protein GI | 171057153 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG2907] Predicted NAD/FAD-binding protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 71 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGACGCA TTGCTGTCAT CGGTTCGGGC ATTGCCGGCC TGTCCACCGC CTGGCACCTG
AGCGAGCCGG GCGCCGGCTG CCGGGTCACG CTGTTCGAGG CCAACGACTA CGTCGGCGGC
CACACCCACA CGGTCGACGT CAGCCTGCCC GATGGGCACG GCGAGCGTGT CACGCACGGG
GTCGACACCG GTTTCCTGGT CTTCAACCGC CGCACCTACC CGGAGTTGCT GAAGCTGTTC
GCCGCGCTCG ACGTCGAGGT GGCGGCCTCC GAGATGTCGT TTTCGGTGCA GGCCGAATCC
GGTGGCCTGG AGTGGAGCGG CTGCAGCCTC GACACCGTGT TCGCCCAGCG CCGCAACCTG
CTGCGCCCGC GTTTTCTCGG CATGCTGGCC GAGGTGCTGC GCTTCAACCG CCTGTGCACC
GCGCTGGCCG AGGCCGGTGA CGATACCGCG CTGGCGCAGG GCATCGGCGA TTTCCTCGAC
GAGCACCGCT TCGGCCAGGC GTTCCGGCGC TGGTACTTCC TGCCGATGAT CGGCTGCATC
TGGTCGTGCC CGACCGAGCA GATGCTGGCC TTCCCGGTCG CCACGCTGAT CCGCTTCTGC
CACAACCACG GCCTGCTGCA GGTGACCGAT CGGCCGCAGT GGTACACGGT GGTCGGCGGC
GCGCGCAACT ACGTGCAGCG CATGCTGCCG CGCATCGCCG ACCTGCGGCT GGCGACGCCG
GTGATCGGCG TGCGGCGCAC CGGCCTGGGC GCGGGCGTGC AGGTGTTCAG CGCCACGGGT
GCCGAGCATT TCGACGAGGT GGTGTTCGCC TGCCACAGCG ACCAGACCCT GCGCATCCTC
GGCGCCGAGG CCAGCCAGGC CGAACGCGCC GTGCTGGGCG CGATCAGCTA CCAGCGCAAC
CGCGCCGTGC TGCACACCGA CGCCAGCCTG CTGCCGCAGC GCCGCAAGGC CTGGGCGGCC
TGGAACTACG AACACGCACC CGACGTCGAC ACCGAAAGCT CGGGCGTGTG CCTGCATTAC
CTGCTCAACC GCCTGCAGCC GCTGCCGTTC GCGCAGCCGG TGGTGGTGTC GCTGAACCCG
GTGCGCGAGC CACGGGCCGA CCAGGTGCTG GCGAGCTTCG ACTATGCGCA CCCGGTGTTC
GACCTCGGCG CGATCGCCGC GCAGCGCCGG GTCGGCGAAC TGCAGGGCCG CCAGCACAGC
TGGTTCTGCG GCGCCTGGAC CGGCTACGGC TTCCACGAGG ACGGCCTGAA ATCCGGCCTC
GCGGTGGTGG CCGGCCTGCG CGAGCGCTGG GCCGGCTCGA CCGACAGGCT GGCCGCATGA
|
|---|
| Protein sequence | MRRIAVIGSG IAGLSTAWHL SEPGAGCRVT LFEANDYVGG HTHTVDVSLP DGHGERVTHG
VDTGFLVFNR RTYPELLKLF AALDVEVAAS EMSFSVQAES GGLEWSGCSL DTVFAQRRNL
LRPRFLGMLA EVLRFNRLCT ALAEAGDDTA LAQGIGDFLD EHRFGQAFRR WYFLPMIGCI
WSCPTEQMLA FPVATLIRFC HNHGLLQVTD RPQWYTVVGG ARNYVQRMLP RIADLRLATP
VIGVRRTGLG AGVQVFSATG AEHFDEVVFA CHSDQTLRIL GAEASQAERA VLGAISYQRN
RAVLHTDASL LPQRRKAWAA WNYEHAPDVD TESSGVCLHY LLNRLQPLPF AQPVVVSLNP
VREPRADQVL ASFDYAHPVF DLGAIAAQRR VGELQGRQHS WFCGAWTGYG FHEDGLKSGL
AVVAGLRERW AGSTDRLAA
|
|---|
| |