| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_0440 |
|---|
| Symbol | |
|---|
| ID | 6164116 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Leptothrix cholodnii SP-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010524 |
|---|
| Strand | + |
|---|
| Start bp | 481133 |
|---|
| End bp | 481936 |
|---|
| Gene Length | 804 bp |
|---|
| Protein Length | 267 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 74% |
|---|
| IMG OID | 641663189 |
|---|
| Product | IclR family transcriptional regulator |
|---|
| Protein accession | YP_001789480 |
|---|
| Protein GI | 171057131 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1414] Transcriptional regulator |
|---|
| TIGRFAM ID | [TIGR02431] beta-ketoadipate pathway transcriptional regulators, PcaR/PcaU/PobR family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 59 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCCGCCC CCGCCGCAAC CCTGTCCGCC GACGACGACG CGCTGCTCGC CGCGTCGCCG
CGCGACTTCG TTGCGGCGCT GCAGAGCGGC CTGCTGGTGA TCGAGGCCTT CGACCAGGAC
CGCCCGCGGC TGTCGATCAG CGAGGTGGCG CAGCGCGCCG GCCTGACCCG CGCCGCCGCG
CGCCGCCACC TGCTCACGCT CACCGCGCTC GGCTACGCGC GCCAGGACGG CCGGCTGTTC
GCGCTGACGC CCAAGGTGCT GCGTTTCGGC CAGAGCTACA TGCACTCGGC GCGGCTGCCG
CGGCTGCTGC AGCCGCAGCT CACGCGGCTG GCGCTGACGC TGCAGGAAGC CAGCTCGGCC
GGCGTGCTCG ATCACGACGA CGTCATCGCC CTGGCTGCGG CCACCGCCGG GCGGGTGGTG
TCGGCCACCT TGCAGCCGGG CACCCGCGTG CCGGCCTGGT GCACCGCCAA CGGCCGGGTG
CTGCTGGCCG CGCTGCCCAA CGACGCGCTG ACCGACTTCC TGGCGCGCCA GGTGATGCTG
CCGCTGACGC CGCAGACCAT CACGCAGCCC GAACGCCTGC GGCTCGAGAT CGAGCGCGTG
CGGGTGCGCG GTTACGCGCT GGTCGACCAG GAGCTCGAAC CCGGCCTGCG CACGCTCTCG
GTGCCGCTGC GCAACTACCG CGGCGACGTG CTGGCCGCGC TCAACATCAG CGCCCACGCC
GGGCGCATGC GCAGCGAGGA ACTGCTCGAG CGCTGCCTGC CGATGCTGCT GGAGGTGCAG
GCGCATCTGC GCGAGCACCT GTAG
|
|---|
| Protein sequence | MSAPAATLSA DDDALLAASP RDFVAALQSG LLVIEAFDQD RPRLSISEVA QRAGLTRAAA
RRHLLTLTAL GYARQDGRLF ALTPKVLRFG QSYMHSARLP RLLQPQLTRL ALTLQEASSA
GVLDHDDVIA LAAATAGRVV SATLQPGTRV PAWCTANGRV LLAALPNDAL TDFLARQVML
PLTPQTITQP ERLRLEIERV RVRGYALVDQ ELEPGLRTLS VPLRNYRGDV LAALNISAHA
GRMRSEELLE RCLPMLLEVQ AHLREHL
|
|---|
| |