Gene Lcho_0431 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_0431 
SymbolmnmA 
ID6163873 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand+ 
Start bp471958 
End bp473100 
Gene Length1143 bp 
Protein Length380 aa 
Translation table11 
GC content69% 
IMG OID641663180 
ProducttRNA-specific 2-thiouridylase MnmA 
Protein accessionYP_001789471 
Protein GI171057122 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0482] Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain 
TIGRFAM ID[TIGR00420] tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones51 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGAACACCC AACTGCCTCC CAAACAGCGC ATCGTCGTCG GCCTCAGCGG CGGCGTGGAT 
TCGGCCGTGA GCGCCTGGCT GCTCAAGCAG CAGGGCCATG AAGTGGTCGC CATCTTCATG 
AAGAACTGGG AGGACGACGA CGACAGCGAG TTCTGCTCGT CGCGCCAGGA CTTCCTCGAC 
GCCGCCTCGG TGGCCGACGT GCTGGGCATC GAGATCGAAC ACGTCAACTT CGCGGCCGAA 
TACAAGGACC GCGTCTTCGC CGAGTTCCTG CGCGAGTATT CGGCCGGCCG CACGCCCAAC 
CCCGACGTGC TGTGCAACGC CGAGATCAAG TTCAAGGCCT TCCTCGACCA CGCCATGCGC 
CTGGGCGCCG ACCGGATCGC CACCGGCCAT TACGCCCGCG TGCGCCACAA CCCGGCCACC 
GGGCTGCATG AACTGCTCAA GGGGCTCGAC CCGCTGAAGG ACCAGAGCTA CTTCCTGCAC 
CGTCTCAACC AGGCACAGCT GGCCAGCACG CTGTTCCCGG TCGGCGAACT GCCCAAGACC 
GAGGTGCGCC GCATCGCGCT CGAGATCGGC CTGCCCAACG CGAAGAAGAA GGACTCGACC 
GGCATCTGCT TCATCGGCGA GCGGCCGTTC CGCGAGTTCC TGAACCGCTA CCTGAGCCAC 
GAGCCCGGCC CGATCAAGGA CGACCGCGGC CGGCGCATCG GCGAGCACGT CGGCCTGAGC 
TTCTACACGC TCGGCCAGCG CAAGGGCATC GGCATCGGCG GCCTCAAAGA GAAGGGCGCG 
CCGCGCGGCG GTGGCGAGCA CGAGCCGTGG TTCGTGGCGC GCAAGGACCT GGCCAGCAAC 
ACGCTCTACG CCGTGCAGGG CCACGACCAC CCGTGGCTGC AGTCGCAGCG CCTGAGCGCC 
GACGACGCCA GCTGGATCGG CACCGTGCCG CAGCCCGGCC AGGGCGGCCT CGCGGCCAAG 
ACGCGCTACC GCCAGGCCGA TTCGGCCTGC GCCGTCGACG CGCTCGATGC GGCCGCACGA 
ACGCTGTCGA TGTCCTTCCC CGCGCCGCAA TGGGCCGTCA CGCCCGGCCA GAGCGTGGTG 
CTCTACGAGG GCGAGGTCTG CCTGGGCGGT GCGGTGATCG CGGCGGCTGA CCAGCGCGCC 
TGA
 
Protein sequence
MNTQLPPKQR IVVGLSGGVD SAVSAWLLKQ QGHEVVAIFM KNWEDDDDSE FCSSRQDFLD 
AASVADVLGI EIEHVNFAAE YKDRVFAEFL REYSAGRTPN PDVLCNAEIK FKAFLDHAMR 
LGADRIATGH YARVRHNPAT GLHELLKGLD PLKDQSYFLH RLNQAQLAST LFPVGELPKT 
EVRRIALEIG LPNAKKKDST GICFIGERPF REFLNRYLSH EPGPIKDDRG RRIGEHVGLS 
FYTLGQRKGI GIGGLKEKGA PRGGGEHEPW FVARKDLASN TLYAVQGHDH PWLQSQRLSA 
DDASWIGTVP QPGQGGLAAK TRYRQADSAC AVDALDAAAR TLSMSFPAPQ WAVTPGQSVV 
LYEGEVCLGG AVIAAADQRA