| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_0424 |
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| Symbol | |
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| ID | 6163835 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | - |
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| Start bp | 465061 |
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| End bp | 466746 |
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| Gene Length | 1686 bp |
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| Protein Length | 561 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 641663173 |
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| Product | AMP-dependent synthetase and ligase |
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| Protein accession | YP_001789464 |
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| Protein GI | 171057115 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG0318] Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 48 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACAAGA TCTGGCTCAA ACACTACCCG GCCGGCGTGC CGGCCGAGGT CAACGTGGCG
CAATACGGCT CGCTGGTCGC GCTGATCGAC GAGAGCTTCT CGCGCAACGC CGACCGCCCG
GCCTACCGCT ACCTCGACCG CGATTTCAGC TACCGGCAGG TCGACGAGCT GTCGCGCGCC
TTTGCGGTCT GGCTGCAGGC GCAAGGGCTG CAGCCGGGCG ACCGGGTGGC GCTGATGATG
CCCAACGTGC CGCAGTATCC GGTGGCGGTG GCCGGGGTGC TGCGCGCCGG CGGCGTGGTG
GTCAACGTCA ATCCGCTCTA CACGCCGCGC GAGCTCGAGC ACCAGCTCAA GGACTGCGGC
GCGCGCATCC TGGTGATCCT GGAGAACTTC GCCCACACGC TGCAGCAGGT GCGCAAGGCG
GTGCCGGTCA AGCACGTGGT GCTGGCGTCG ATGGGCGAGC TGATGGGCTT CCCGAAGGGG
CTGATCGTCG ACTTCGTGGT GCGCAAGGTC AAGAAGCTGG TGCCGGCCTT CGAGCTGCCG
GGCGCCGTGC GCTTCAAGGA CACGCTGGCC GAAGGCCGGG GCAAGACCCC GAAACCGGTC
AGCACCGGCC CGGACGACGT CGCGGTGCTG CAGTACACCG GCGGCACCAC CGGCGTCAGC
AAGGGCGCCG TGCTGCTGCA TCGCAACCTG GTGGCCAACC TGCTGCAAAG CGAGGCCTGG
TACCAGCCGG CGCTGCACAA GGTGCCCGCG GGCGAGCAGA TCGTGCAGGT CTGCGCGCTG
CCGCTCTATC ACATCTTCGC CTTCAACGTG AACATGATGC TGGGCCTGCG GGTCGGGGCG
TGCAACATCC TGATCCCCAA TCCGCGCGAC CTGCCGGCCG TCTTCAAGGC CCTGGCGGGG
CGGCGCTTCC ACACCTTCCC GGCCGTCAAC ACGCTGTTCC ACGCGATGGC CAACCACCCC
GACTTCGGCA GCGTCGACTG GAGCCACCTG AAGATCTCGG CCGGCGGCGG CATGGCGGTG
CAGCAGGCCA CCGCCAAGCT CTGGCTCGAG AAGACCGGCT GCCCGATCTG CGAAGGCTAC
GGCCTGTCGG AGACCTCGCC GGTGGTGGCG GCCAACCCGA CCGACACCAC GGCCTACTCG
GGCACCATCG GCCTGCCGAT CCCCAACACC GACGTGCGGC TGCTCGACGA CAACGGCGCC
GAAGTGGGCC CCGGCCTGGC CGGCGAGATC GCGGTCAAGG GCCCGCAGGT GATGGCCGGC
TACTGGCAGC GCCCGGACGA GACCGCCAAG GTCATGACCG CCGACGGCTG GTTCCGCACC
GGCGACATCG GCATGGTCGA CGAGCGCGGC TACTTCCGCA TCGTCGACCG CAAGAAGGAC
ATGATCCTGG TGTCGGGCTT CAACGTCTAT CCCAACGAGA TCGAGGACGT GCTCACGCAG
ATGCCTGGCG TGCTCGAATG CGCCGCGGTC GGCGTGGCCG ATGCCCGCAC CGGCGAGGCC
GTCAAGGTGG TGATCGTGCG CAAGGATCCG TCGCTCACCG AAGCCGACGT GCGGGCCTAC
TGCGAGCAGA ACCTGACCGG CTACAAGCGC CCGCGCCTGA TCGAGTTCCG CCCGGACCTG
CCCAAGACGC CGGTCGGCAA GGTGCTGCGC CGCGAACTGC GCGACAAGCC GGCTGTGGCG
CCATGA
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| Protein sequence | MNKIWLKHYP AGVPAEVNVA QYGSLVALID ESFSRNADRP AYRYLDRDFS YRQVDELSRA
FAVWLQAQGL QPGDRVALMM PNVPQYPVAV AGVLRAGGVV VNVNPLYTPR ELEHQLKDCG
ARILVILENF AHTLQQVRKA VPVKHVVLAS MGELMGFPKG LIVDFVVRKV KKLVPAFELP
GAVRFKDTLA EGRGKTPKPV STGPDDVAVL QYTGGTTGVS KGAVLLHRNL VANLLQSEAW
YQPALHKVPA GEQIVQVCAL PLYHIFAFNV NMMLGLRVGA CNILIPNPRD LPAVFKALAG
RRFHTFPAVN TLFHAMANHP DFGSVDWSHL KISAGGGMAV QQATAKLWLE KTGCPICEGY
GLSETSPVVA ANPTDTTAYS GTIGLPIPNT DVRLLDDNGA EVGPGLAGEI AVKGPQVMAG
YWQRPDETAK VMTADGWFRT GDIGMVDERG YFRIVDRKKD MILVSGFNVY PNEIEDVLTQ
MPGVLECAAV GVADARTGEA VKVVIVRKDP SLTEADVRAY CEQNLTGYKR PRLIEFRPDL
PKTPVGKVLR RELRDKPAVA P
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