| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_0416 |
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| Symbol | |
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| ID | 6161065 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | + |
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| Start bp | 457631 |
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| End bp | 458626 |
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| Gene Length | 996 bp |
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| Protein Length | 331 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 641663165 |
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| Product | TRAP dicarboxylate transporter, DctP subunit |
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| Protein accession | YP_001789456 |
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| Protein GI | 171057107 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1638] TRAP-type C4-dicarboxylate transport system, periplasmic component |
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| TIGRFAM ID | [TIGR00787] tripartite ATP-independent periplasmic transporter solute receptor, DctP family |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 43 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAACGTC TGTTCATCAA GACCGTGCTC GCCACCGTTG CCCTGGCTGC CTGCGGCTTT
GCCGCTGCCC AGGAACGCAC CTTCAAGTTC GCCCTGCAGA ACCCCAAGGG CCACCCGCTG
GAAGTGGGCG CATCCAAGTT CGCCGAACTG GTCGCGGCCA AGTCGGGCGG CAAGTTCAAG
GTCAACGTGT TTGCCGGCGG CACGCTCGGT GGCGACGCCG CCAACGTGTC GGCGCTGCAA
GGCGGCACGA TCGAGTTCGT GATGCTGAAC TCGGGCATCC TGGCCTCGCA GGTCAAGGAC
TTCGAGGTGT TCGACTTCCC CTTCCTGTTC GCCAATGCGA AGGAGGCCGA CGCCATCGTC
GACGGCCCCT TCGGCCAGAA GCTGCACGCC AAGCTGGCCG ACAAGGGCAT CATCGGCCTG
GCCTACACCG AGCTGGGTTT CCGCAACATC ACCAACAGCA AGAAGCCCAT CAACACGGTG
GAAGACCTTG CCGGCCTGAA GCTGCGCGTG ATCCCCAACG CGATCAACGT CGACTGGGTC
AAGGCGGTGG GCGCCAACCC GACGCCGCTG GCCTTCCCCG AGGTCTACGC CGCGCTGGAG
CAGAAGGCCA TCGACGGCCA GGAGAACCCG CTGAGCGTGA TCCTGGCCAA CAAGTTCTTC
GAGGTGCAGA AGAACCTGGC GGTGACCAAC CACCAGTACA ACCCGCAGTC GATCATCTTC
AGCAAGAAGG TCTGGGACAG CCTGACGCCG GCCGACCAGA AGGTGCTGCA GGACGCGGCC
AAGGAGGCCT CGGCCTTCCA GCGCAAGGTC AACCGCGACA AGTCGGCCGA CGACCTGGCC
GAGCTGAAGA AGGCCGGCAT GACCGTCACC GAGTTCAGCG CCGCCGAGCA GGCCAAGCTG
CGTGACAAGT TCAAGCCGGT GATCGACAAG CACGGCGCCG CCATCAGCGC CACCGTCGCC
GAAGTGCAGG CCGAGCTGGC CAAGATCCGC AAGTAA
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| Protein sequence | MKRLFIKTVL ATVALAACGF AAAQERTFKF ALQNPKGHPL EVGASKFAEL VAAKSGGKFK
VNVFAGGTLG GDAANVSALQ GGTIEFVMLN SGILASQVKD FEVFDFPFLF ANAKEADAIV
DGPFGQKLHA KLADKGIIGL AYTELGFRNI TNSKKPINTV EDLAGLKLRV IPNAINVDWV
KAVGANPTPL AFPEVYAALE QKAIDGQENP LSVILANKFF EVQKNLAVTN HQYNPQSIIF
SKKVWDSLTP ADQKVLQDAA KEASAFQRKV NRDKSADDLA ELKKAGMTVT EFSAAEQAKL
RDKFKPVIDK HGAAISATVA EVQAELAKIR K
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