| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_0415 |
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| Symbol | |
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| ID | 6161064 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | + |
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| Start bp | 456233 |
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| End bp | 457513 |
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| Gene Length | 1281 bp |
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| Protein Length | 426 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 641663164 |
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| Product | TRAP dicarboxylate transporter, DctM subunit |
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| Protein accession | YP_001789455 |
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| Protein GI | 171057106 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1593] TRAP-type C4-dicarboxylate transport system, large permease component |
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| TIGRFAM ID | [TIGR00786] TRAP transporter, DctM subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 40 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCGTAT TCATCTTCCT CGGCTCGCTG CTGGCGGCCA TGGCCATCGG CCTGCCGATC
GCCTATTCGC TGCTGCTGTC GGGCGTGGCC CTGATGTGGC ACCTCGACCT GTTCGACGCC
CAGATCCTGG CGCAGAACGT CATCAACGGC GCCGACTCCT TCCCGCTGCT GGCGGTGCCC
TTCTTCATGC TGGCCGGCGA GATCATGAAC GTCGGCGGCC TGTCGCGTCG CATCGTCAAC
CTGGCGTTGA CGCTGGTGGG CCACAAGCGT GGCGGCCTGG GCTTCGTGGC CATCGTGGCG
GCCTGCCTGC TGGCGGCGCT GTCGGGTTCG GCGGTGGCCG ACACCGCCGC GCTGGCCGCG
CTGCTGCTGC CGATGATGGT GCGAGCCGGG CATGACAAGG CCCGCGCGGG CGGCCTGATC
GCCAGCGCCG GCATCATCGC GCCGATCATC CCGCCGTCGA TCGGCTTCGT GATCTTCGGC
GTGGCGGCCA ACGTGTCGAT CAGCAAGCTG TTCCTGGCGG GCATCGTGCC GGGGCTGCTG
ATGGGCCTGA GCATCGCGGT GACGTGGTAT TTCGTCTCCA AGAAGGAGAA CATCACGCCC
CCGCCCAAGG CGAGCTGGGC CGAGCGCATC GTGGCGCTGC GCCAGGCGAC CTGGGCGCTG
GTGCTGCCGG TGATCGTGAT CGTGGGCCTG AAGTTCGGCG TCTTCACGCC GACCGAGGCG
GCGGTGGTGG CGGCGGTCTA CGCGCTGTTC GTCTCGACCG TGATCTACGG CGAGCTCAAG
CTGCACCAGC TGCACGAGGT GTTCGTCAGC GCCGCCAAGA CCACCGCGGT GATCATGTTC
CTGGTGGCCG CGGCAATGGT CAGCGCCTGG CTGATCACGG TGGCCGACAT CCCGAGCAAG
ATGATCACGC TGCTCGAGCC GTTCATGGAC AACCAGACGC TGCTGCTGCT GGCGATCATG
TTCCTGGTGA TCGCGGTGGG CACGGCGATG GACATGACGC CGACCATCCT GATCATGACC
CCGGTGCTGA TGCCGGTGAT CAAGGCCGCG GGCATCGACC CGGTGTACTT CGGCGTGCTG
TTCATCATGA ACAACGCCAT CGGGCTGATC ACGCCGCCGG TGGGCACGGT GCTCAACGTG
GTGGCCGGGG TGGGCAAGAT GAAGATGGAC GAGGTGACCA AGGGCGTCAT GCCGTTCATG
CTGGCCCAGT TCTTCGTCAT GTTCATGCTG GTGTTCTTCC CCTCGATCGT CACGGTGCCG
GCCAAGTGGC TGGCCAACTG A
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| Protein sequence | MTVFIFLGSL LAAMAIGLPI AYSLLLSGVA LMWHLDLFDA QILAQNVING ADSFPLLAVP
FFMLAGEIMN VGGLSRRIVN LALTLVGHKR GGLGFVAIVA ACLLAALSGS AVADTAALAA
LLLPMMVRAG HDKARAGGLI ASAGIIAPII PPSIGFVIFG VAANVSISKL FLAGIVPGLL
MGLSIAVTWY FVSKKENITP PPKASWAERI VALRQATWAL VLPVIVIVGL KFGVFTPTEA
AVVAAVYALF VSTVIYGELK LHQLHEVFVS AAKTTAVIMF LVAAAMVSAW LITVADIPSK
MITLLEPFMD NQTLLLLAIM FLVIAVGTAM DMTPTILIMT PVLMPVIKAA GIDPVYFGVL
FIMNNAIGLI TPPVGTVLNV VAGVGKMKMD EVTKGVMPFM LAQFFVMFML VFFPSIVTVP
AKWLAN
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