Gene Lcho_0414 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_0414 
Symbol 
ID6161063 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand+ 
Start bp455656 
End bp456216 
Gene Length561 bp 
Protein Length186 aa 
Translation table11 
GC content65% 
IMG OID641663163 
Producttripartite ATP-independent periplasmic transporter DctQ 
Protein accessionYP_001789454 
Protein GI171057105 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG3090] TRAP-type C4-dicarboxylate transport system, small permease component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones42 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAACCGCG TGATTGATGT CTACTGCCGC GTCCTGGAAT GGGCGCTGGT GGTCATGCTG 
GCGCTGATGG TCGTGCTGGT GTTCGGCAAC GTGGTGATGC GCTACGCCTT CAACTCGGGC 
ATCACGGTGA GCGAGGAACT CGCGCGCTGG CTGTTCGTGT GGATGACGTT TCTGGGCGCC 
ATCGTCGCGC TCAAGGAGCA CGGCCACCTC GGCACCGACA TGCTGACCTC GCACCTGTCG 
CTGGCGGGCA AGAAGGTCTG CGCGCTGATC TCGCAGGTGC TGATGCTCTA CGTCACCTGG 
TTGCTGTTCT CGGGCAGCTG GGCCCAGGCG GTCATCAATC GCGAGGTCGA GGCCCCGGTC 
ACCGGCCTGT CGGTGGCGAT CTTCTACGGC GCCGGCATCG TCTTTGCCGT CTCCAGCGCG 
GTGCTGCTGC TGATGCAGCT GTGGCGCACG CTCAGCGGTC AGGCCACCGA GGCCGAGCTG 
TCGATGAGCC AGGAGTCCGA AGACCTGGCG CAGGTGCAGG CGCTGCACCT CGACCAGAGC 
CAGACCTTCA AGAAGCGCTG A
 
Protein sequence
MNRVIDVYCR VLEWALVVML ALMVVLVFGN VVMRYAFNSG ITVSEELARW LFVWMTFLGA 
IVALKEHGHL GTDMLTSHLS LAGKKVCALI SQVLMLYVTW LLFSGSWAQA VINREVEAPV 
TGLSVAIFYG AGIVFAVSSA VLLLMQLWRT LSGQATEAEL SMSQESEDLA QVQALHLDQS 
QTFKKR