Gene Lcho_0413 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_0413 
Symbol 
ID6161062 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand+ 
Start bp454793 
End bp455476 
Gene Length684 bp 
Protein Length227 aa 
Translation table11 
GC content67% 
IMG OID641663162 
ProductTetR family transcriptional regulator 
Protein accessionYP_001789453 
Protein GI171057104 
COG category[K] Transcription 
COG ID[COG1309] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones40 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAACGAAC CGGTACATTC TGCGCGCGTC CGTCCTGCCC GCAATGGGCC GAAGGCCAAG 
GCGCCGACCC GCACCAACGA TCCCGAGCGC ACCATGGCCG GCATCCTGGA GGTGGCGACG 
CAGGAGTTCG CCGAGAAGGG TCTGGCCGGG GCGCGCATCG ACGAGATCGC CGCTGCCACC 
CAGACCAGCA AGCGGATGAT CTACTACTAC TTCGGCAGCA AGGAAGGCCT GTACATCGCC 
GTGCTGGAGG AGGCCTACCG CCGCGTGCGC AGCATCGAGG CCGAGCAGCA GCTCGAAGGT 
CTGCCGCCCG AGCAGGCGCT GCGCCGGCTG GTGGCGTTCA CGTTCGACCA CCACCACAAC 
AACCCGGCCT ACATCCGGCT GGTGGCCTCC GAGAACATGA ACCGCGCCCA GTTCATGGCG 
CAGAGCCGCA TCATCCAGGG CCTGAACGTG CCGGCGATCG AGGCGATCCG CCGGCTCTAC 
GAGCGCGGCG TGGCCAGCGG CGAGTTCCGC CCGGGGCTCG ACGTGGTCGA CATCCACGCC 
TCGATCTCGG CGCTGACGTT CTTCAACGTC TCGAACCGCC ACACCTTCGG ACTGATCTTC 
AAGCACGACC TCGGTGCGCC CGAGACGCTG GCCCTGCGCC GCGCCAACAT CGTCGAAATG 
ATCGTGCGCT ACGTGCGCGC CTGA
 
Protein sequence
MNEPVHSARV RPARNGPKAK APTRTNDPER TMAGILEVAT QEFAEKGLAG ARIDEIAAAT 
QTSKRMIYYY FGSKEGLYIA VLEEAYRRVR SIEAEQQLEG LPPEQALRRL VAFTFDHHHN 
NPAYIRLVAS ENMNRAQFMA QSRIIQGLNV PAIEAIRRLY ERGVASGEFR PGLDVVDIHA 
SISALTFFNV SNRHTFGLIF KHDLGAPETL ALRRANIVEM IVRYVRA