Gene Lcho_0410 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_0410 
Symbol 
ID6161244 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand- 
Start bp448715 
End bp449164 
Gene Length450 bp 
Protein Length149 aa 
Translation table11 
GC content71% 
IMG OID641663159 
ProductRpiB/LacA/LacB family sugar-phosphate isomerase 
Protein accessionYP_001789450 
Protein GI171057101 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG0698] Ribose 5-phosphate isomerase RpiB 
TIGRFAM ID[TIGR00689] sugar-phosphate isomerases, RpiB/LacA/LacB family
[TIGR01120] ribose 5-phosphate isomerase B 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones35 
Fosmid unclonability p-value0.52921 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAGATCG CCATCGGCTG CGACGAAGCC GCCTGCCAGA TGAAGGACGC CATCAAGGCC 
GAGCTCGCCG CCCAGGGCCA CGAGGTGCAG GACTACGGCA CGCACGACAA CGCGCCGGTG 
CTCTACCCCG ACATCGGCGT GGCGCTGGCC GAAGGCGTGG CGCGCGGCGA GGCCCAGCGC 
GGCCTGCTGT TCTGCGGCAC CGGCATCGGC ATGGCGATCT CGGCCAACAA GGTGCCGGGC 
ATCCGCGCCG CGCAGGCGCA CGACACCTAC TCGGCCGAGC GCGCCAGCAA GAGCAACGAC 
GCCCAGATCA TCACGATCGG CGCGCGGGTG GTCGGCATCG AGCTGGCCAA GGCGATCGTG 
CAGGCCTTCA TCGGCAGCTC GTTCGAGCCC CGCTCGCAGT CGAAGCTGGA CGCACTGGCG 
GCCCACGAGC AGCGCCTGCG CCAGCCCTGA
 
Protein sequence
MKIAIGCDEA ACQMKDAIKA ELAAQGHEVQ DYGTHDNAPV LYPDIGVALA EGVARGEAQR 
GLLFCGTGIG MAISANKVPG IRAAQAHDTY SAERASKSND AQIITIGARV VGIELAKAIV 
QAFIGSSFEP RSQSKLDALA AHEQRLRQP