| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_0409 |
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| Symbol | |
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| ID | 6161243 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | - |
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| Start bp | 447659 |
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| End bp | 448678 |
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| Gene Length | 1020 bp |
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| Protein Length | 339 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 641663158 |
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| Product | DeoR family transcriptional regulator |
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| Protein accession | YP_001789449 |
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| Protein GI | 171057100 |
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| COG category | [K] Transcription |
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| COG ID | [COG2390] Transcriptional regulator, contains sigma factor-related N-terminal domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 34 |
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| Fosmid unclonability p-value | 0.490388 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCGATA CCGCCGCCCG CCCGCTCGAC AAACCGCCTG CCCGCAGCGC CGCCTCGTCG
CCGATGTCGC ACGAGGAGCT GACGCAGATC GCCACGCTGT ATTACATCGA CGGGCAGACG
CAGGACGAAC TGTCGCGCCG CTTCGGCATC AGCCGCGCCA CCGTCGGCCG GGTGCTCAAG
CGCGCGCAGG AGCTGGGCAT CGTCGAGATC CGGGTGCATC ACCACCCGAC CAAGACGGTC
GATCTGGAGG CGCAGCTGAT CGAGCGTTTC GGCATCAGCC GGGCGCTGCT GTCGGTCGAT
CACAAGGACC CGGACAAGCA GCGCGCGCTG CTCGGTGGTC TGGTGGCGAC GTACCTGGAG
CGCACGTTGA GCGACGGCGC GATCGTGGCG GTCGGCATGG GCCGCAACGT CAGCGCCGTG
AGCGAACACG CGATGAGCGC GACGCAGCGC CACTGCACCT TCGTCTGCGC GATCGGCGGC
AGCTACCGCG GCGGCGAGTC GATGAACCCC GACCACATCT GCCGCCGCCT GGCCGCGCGT
TACGGCGGCG AGAGCGAGAC GCTCTACGCG CCGGCGATGG TCGGCGACGC CGCGCTGCGC
CGCGCGCTGG TCGACAACGA CACCGTGCGC CACACGCTCG ACAAGGCGCG CCGCGCCGAC
ATCGCGCTGG TCGGCGTGGG CGACATGAGC GAAGACAGCA ACATGGTGCG CATGGGCTGG
TTCACCGCCC AGGAGATCGC CGAGGCCAAG CGCTCGGGCA CGGTCGGCGA CGTGATGGGC
TACGACTTCA TCGACATCCA CGGCCTGCCG TCGCTGGCGC CGATCCAGGG CCGCGTGGTC
GGGCTGCACA CCGGCGACCT GCAGCGCATC CCCAACGTGA TCGCGATCGC GGCCGAGAAC
ACCAAGGTGA CGGCGCTGCT GGGCGCGCTG CGCACCGGCT CGATCGACAC GCTGGCCACC
ACCGCGAGCA ACGCGATGGC GGTGCTGCAT CTGGACGACG CGACGCGGGC AGGCAGCTGA
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| Protein sequence | MTDTAARPLD KPPARSAASS PMSHEELTQI ATLYYIDGQT QDELSRRFGI SRATVGRVLK
RAQELGIVEI RVHHHPTKTV DLEAQLIERF GISRALLSVD HKDPDKQRAL LGGLVATYLE
RTLSDGAIVA VGMGRNVSAV SEHAMSATQR HCTFVCAIGG SYRGGESMNP DHICRRLAAR
YGGESETLYA PAMVGDAALR RALVDNDTVR HTLDKARRAD IALVGVGDMS EDSNMVRMGW
FTAQEIAEAK RSGTVGDVMG YDFIDIHGLP SLAPIQGRVV GLHTGDLQRI PNVIAIAAEN
TKVTALLGAL RTGSIDTLAT TASNAMAVLH LDDATRAGS
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