| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_0407 |
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| Symbol | |
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| ID | 6161241 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | + |
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| Start bp | 445478 |
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| End bp | 446737 |
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| Gene Length | 1260 bp |
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| Protein Length | 419 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 641663156 |
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| Product | TRAP dicarboxylate transporter, DctM subunit |
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| Protein accession | YP_001789447 |
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| Protein GI | 171057098 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1593] TRAP-type C4-dicarboxylate transport system, large permease component |
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| TIGRFAM ID | [TIGR00786] TRAP transporter, DctM subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 33 |
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| Fosmid unclonability p-value | 0.424337 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCGCAT TGATCCTGAT GGTGTTCGGC ATCGCGGCGG TGGCCGCCGT GCCGATCGCC
CACGCCCTGC TGATGGCCGC GATGGCGGCC GCCGCCACCT CCGACCGGGT GCCGCTCGAC
CTGCTGGTGC AGCAGATGGT GGCGCAGGTG CAGAGCTTTC CGCTCATCGC CATCCCCTTC
TTCATGCTGA CCGGCACGCT GATGATGGGC GGCAAGCTGG GCGAGTCGCT GATCGGTGTG
CTGACCACGC TGATCGGCCG CTTCCACGGC GGCCCCGGCC AGGTCGGCGT GCTGTCGTCG
ACCCTCTTCG GCGGCGTGTC GGGCTCGGCG GTGGCCGACG CCTCGGCGAT CGGCTCGCTG
CTGATCCCGT GGCAGAAGCG GCTCGGTTAT CCGCCGGCGT TCTCGGCTGC CACGCTGGCG
GCGGCGGCCA CGATCGACAT CCTGATCCCG CCGTCGATCC CGATGATCCT GTTCGCGCTC
AGCAGCAACA CTTCGATCGC CGCGCTGTTC GTGGCCGGCA TCCTGCCCGG ACTGGCGATG
TGCGTGGGCT TCATGGCGGT GTGCTGGTGG GTCGGCAAGC GCCGCAACTT CCCGCGCGAC
GTCCGCACGC TCGACTGGCC GGTGTTTCGC AAGCAGCTGC TGTACGCCTC GCCCGCACTG
GTGCTGCCGG TGCTGATCAT CGTCTTCCTG CGCTTCGGCA TCGCCACGCC CACCGAGGTC
AGCGTGCTGT CGACGCTCTA TGCCGGCGTG GTGTCGGCGG TGATCTACCG CGACCTGGGC
ATGAAGCGCC TGAACCACGC GGTGTTCGAG GCCGGCCTCG CCACCGGCGT GGTGCTGCTG
GTGATCATGG CCTCTGCCGC GATCGGCTGG CTGCTGACCT ACGACCACAT GCCCGACGGC
GTGGTCGCCT GGGCCACCGC CAACCTCGAC AGCGCCTGGA GCGTGATCCT GCTGATGAAC
CTGCTGATGC TGGTCTGCGG CATGTTCATC GACCTGCCCG CCGCCGTGCT GCTGCTCACG
CCCGTGTTCG TGCCGCTGGC CAACGCGATC GGCATGGACC TGACGCAGCT CGGCATCATG
ATGACCGTCA ACCTCGCGAT CGGCCTCTAC ACGCCGCCGG TCGGCACCAC GCTGTTCATC
ACCAGCGCGG TGGCCCGCGT CAAGGTGGGC GAGACGGTGC GCGAGCTCGG GCCGTTCTAC
CTCGTCGCCT TCGGCATCCT GGCGCTGGTG TCCTACGTGC CCGCCACCAT CCTGCGCTGA
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| Protein sequence | MTALILMVFG IAAVAAVPIA HALLMAAMAA AATSDRVPLD LLVQQMVAQV QSFPLIAIPF
FMLTGTLMMG GKLGESLIGV LTTLIGRFHG GPGQVGVLSS TLFGGVSGSA VADASAIGSL
LIPWQKRLGY PPAFSAATLA AAATIDILIP PSIPMILFAL SSNTSIAALF VAGILPGLAM
CVGFMAVCWW VGKRRNFPRD VRTLDWPVFR KQLLYASPAL VLPVLIIVFL RFGIATPTEV
SVLSTLYAGV VSAVIYRDLG MKRLNHAVFE AGLATGVVLL VIMASAAIGW LLTYDHMPDG
VVAWATANLD SAWSVILLMN LLMLVCGMFI DLPAAVLLLT PVFVPLANAI GMDLTQLGIM
MTVNLAIGLY TPPVGTTLFI TSAVARVKVG ETVRELGPFY LVAFGILALV SYVPATILR
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