Gene Lcho_0406 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_0406 
Symbol 
ID6161240 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand+ 
Start bp444932 
End bp445462 
Gene Length531 bp 
Protein Length176 aa 
Translation table11 
GC content69% 
IMG OID641663155 
Producttripartite ATP-independent periplasmic transporter DctQ 
Protein accessionYP_001789446 
Protein GI171057097 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG3090] TRAP-type C4-dicarboxylate transport system, small permease component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones30 
Fosmid unclonability p-value0.13686 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAATCCC TCGAACGCGC CATCACGCGG GTCTGCCAGT CGGTGATGTG GATCACCACG 
GCGGTGATCT TCGTGATCCT CGCCATCAAC ACCCTGCTGC GCTACAGCAC CGGCGCCAGC 
CTGCAATGGG GCAACGAAGT GCCCGAGCTG CTGTTCCCGT GGCTGGTGAT GGCCGGCGTG 
GTGCTGGGCG CCGTGCACGG CTCGCACATC ACCACCAGTT TCCTGATGGA CGCTGTGCCG 
GCGGCCCTGC GCCGCATCGT CGCGGTGCTC GGCTGGCTGG GCGTGGCGGG GCTCTACGCC 
ACGCTGACCT GGGCCACCTG GAACATGCTC GACATCGTCG CCGACGAGAA GAGCCCGATC 
CTGCAGGTGC CCGGCTCGGT CACCTACGGC TGCGTGATGG GTGGCATGGC GATGCTCGCC 
GTGCTGGCGC TGGGCTCGGC CTGGACGGCC TGGCGCGGCG AGTCGAACGG GCTCGGCCAC 
GGCCAGGGTC ACGATGACGC CGCCGCCGCA CCGCAAGTCA ACATCGCCTG A
 
Protein sequence
MKSLERAITR VCQSVMWITT AVIFVILAIN TLLRYSTGAS LQWGNEVPEL LFPWLVMAGV 
VLGAVHGSHI TTSFLMDAVP AALRRIVAVL GWLGVAGLYA TLTWATWNML DIVADEKSPI 
LQVPGSVTYG CVMGGMAMLA VLALGSAWTA WRGESNGLGH GQGHDDAAAA PQVNIA