Gene Lcho_0400 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_0400 
Symbol 
ID6161689 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand+ 
Start bp439096 
End bp439764 
Gene Length669 bp 
Protein Length222 aa 
Translation table11 
GC content70% 
IMG OID641663149 
Productlipoate-protein ligase B 
Protein accessionYP_001789440 
Protein GI171057091 
COG category[H] Coenzyme transport and metabolism 
COG ID[COG0321] Lipoate-protein ligase B 
TIGRFAM ID[TIGR00214] lipoate-protein ligase B 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones31 
Fosmid unclonability p-value0.255142 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCTGATCC GCAACCTGGC CCGCGTGCCT TACGAGCCCA CCTACGACGC GATGCGCGCC 
TTCACCGCCG CGCGCACGCC CGACAGCGCC GACGAACTCT GGCTGTGCGA GCACGATCCC 
GTCTACACCC AGGGCATCGC CGGCAAGGCC GAGCATGTGC TCGCGCCCGA CGGCGTGCCG 
GTGGTCGCCA CCAACCGCGG CGGCCAGGTC ACGTACCACG GGCCGGGGCA GGTGGTGGCC 
TACCCGCTGG TCGATCTCAA GCGGCTGGGC ATCTATGTCA AGGAGTACGT CTACCGGGTC 
GAAGAGGCCG TGATCCGCAC GCTCGCCACC TGGCACGTCA CCGGCCACCG CGTGAGCGGC 
GCGCCGGGTA TCTACGTGCG GCTCGACGAC CCGTTCGATC ACCGCGCGCT GACCGGCCCG 
CACGATCCGC GCGACCCGTT CCGCGGCCTG GGCAAGGTGT CGGCGCTGGG CATCAAGATC 
GCCAACCACT GCACTTACCA CGGCGTGGCG CTGAACGTGG CGATGGATCT CTCGCCCTAT 
GCGCGCATCA ACCCTTGCGG TTATGCAGGG CTGCAAACAG TCGATCTGGC TACACTCGGC 
GTCGCCGCCG AATGGCCCGA CGCAGCGCAG CGCCTGGGTG ATCGGCTCGC CGCGCTGCTC 
GCGCCCTGA
 
Protein sequence
MLIRNLARVP YEPTYDAMRA FTAARTPDSA DELWLCEHDP VYTQGIAGKA EHVLAPDGVP 
VVATNRGGQV TYHGPGQVVA YPLVDLKRLG IYVKEYVYRV EEAVIRTLAT WHVTGHRVSG 
APGIYVRLDD PFDHRALTGP HDPRDPFRGL GKVSALGIKI ANHCTYHGVA LNVAMDLSPY 
ARINPCGYAG LQTVDLATLG VAAEWPDAAQ RLGDRLAALL AP