Gene Lcho_0394 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_0394 
Symbol 
ID6164015 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand+ 
Start bp434538 
End bp435167 
Gene Length630 bp 
Protein Length209 aa 
Translation table11 
GC content68% 
IMG OID641663143 
Productcytochrome c class I 
Protein accessionYP_001789434 
Protein GI171057085 
COG category[C] Energy production and conversion 
COG ID[COG2863] Cytochrome c553 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones28 
Fosmid unclonability p-value0.091013 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAATCGC CTGCCCAGAA GCTCCTTGCC CTGCTCGCTG CTGTCACGCT GGCCACCCCG 
CTGTGGGCGG CCGATGCGGC ACCCGCCGCC AAGGTGGATC CCGCCAAGGG AGAAGCCCTC 
TCGGCCCAGG TGTGCGGCGC CTGCCACACC GCCGACGGTT CGCGCGGCAC GCCCGCCAAC 
CCGATCCTGC AGGGCCAGCA CCCTGAATAC CTGGTCAAGC AGCTGTCCGA ATTCAAGGCC 
GGCAAGCGCG ACAGTGCCGT CATGAAGGGC TTCGCCTCGA TGCTGAGCGA CGCCGACATG 
AAGAACGTCG CCGCCTTCTA CGCCGGCAAG CAGGCCAAGC CGGGCGCTGC CAAGGACAAG 
GACCTGGTCG TGCTGGGTGA AAAGATCTAC CGCGGGGGCA TTGCCGATCG CAGCATCCCG 
GCCTGCTCGG GCTGCCACAG CCCGACCGGC GCCGGCATCC CCGCGCAGTA CCCGCGCCTG 
GCCGGCCAGC ACAGCGACTA CACCGAGCTG CAGCTCAAGG GCTTCCGCGA CGGCGTGCGC 
AAGAACAACC TGCAGATGAC CGGCGTGGCC GCCAAGCTCA ACGATCGCGA GATCAAGGCC 
GTGTCCGACT ACATCGCCGG CCTGCACTGA
 
Protein sequence
MKSPAQKLLA LLAAVTLATP LWAADAAPAA KVDPAKGEAL SAQVCGACHT ADGSRGTPAN 
PILQGQHPEY LVKQLSEFKA GKRDSAVMKG FASMLSDADM KNVAAFYAGK QAKPGAAKDK 
DLVVLGEKIY RGGIADRSIP ACSGCHSPTG AGIPAQYPRL AGQHSDYTEL QLKGFRDGVR 
KNNLQMTGVA AKLNDREIKA VSDYIAGLH