| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_0391 |
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| Symbol | |
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| ID | 6160574 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | + |
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| Start bp | 430207 |
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| End bp | 432579 |
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| Gene Length | 2373 bp |
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| Protein Length | 790 aa |
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| Translation table | 11 |
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| GC content | 74% |
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| IMG OID | 641663140 |
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| Product | patatin |
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| Protein accession | YP_001789431 |
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| Protein GI | 171057082 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG1752] Predicted esterase of the alpha-beta hydrolase superfamily |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 0.0374937 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACGGGC CCTGTTTGCT GCCGAATCCC TGCGCCACGC GTCCCGTCCT TCACCGGCTC
GCTGCGGTGC TGCTCGTGCT CGGGTTGTGC GGCCCGGCGC GGGCGGAGCC GGCGCCCACC
GAGCCGGCCC CGACCGCGCC ATCGCCGCGC CTGAAGACCT GCGGCACGGC GCAGCAGCCG
CGGCCCTGCG TCGGCCTGGT GCTGTCGGGC GGCGGCGCAC GCGGCCTGGC GCATGTGGGC
GTGCTGAAGG TGCTCGAGCG CGAGCGCATC CCGGTCGACC TGATCGCCGG CACCTCGATG
GGCGCCATCA TCGGCGGCCT GTTCGCCAGC GGCATGGGCG CGGCCGAACT CGAGCGCGAG
CTGCTCGCGC TCGACTGGGA GGCGCTGTTC GCCAGCCGGG TGCCGCGCGA GACGCTCAGC
CAGCGCCGCA AGGAAGAAGA CTTCGAGATC TCGCCCGCGG TCGAGATCGG CCTGGCGCGC
GACGGCAGCC CGATGCTGCC GCTGGGCTCG GTGTCGAGCC GCGGCCTCGA GCTGCTGCTG
CGCCGCTACA CGCTGCCGGT GCGCACGGCG CCGCATTTCG ACGCCCTGCC GATCCCGTTC
CGCGCTGTCG CCACCGACAT GGAGAGCGGC GCGCCGGTGG TGTTCGAGCG CGGCGACCTG
GCGCAGGCGC TGCGCGCGAG CATGTCGGTG CCGGCGGTGT TCCCGCCCAC CGACGTCGAC
GCCCGCGTGC TCGGCGACGG CGGCCTGGTC GACAACCTGC CGGTCGACGT GGTGCGGGCG
CTGGGCGCGC AGGTGGTGAT CGCCGTCAAC ATCGGCACCC CGCTGGCCGC GCGCGACACG
CTGGGCACGG TGCTCGGCCT GACGGCGCAG ATGATCAACA TCCTGACCGA GCAGAACGTG
CAGCGCTCGA TCGCCGGGCT CGATGCCGAG CGCGACCTGC TGATCGCACC CGAACTCGGC
AAGATCACGG CCGCCGACTT CGGCCGCGTG CGCGAGCTGA TCACGCTCGG CGAAAGCGGC
GCCCAGGCGC TGCAGCCGCG GCTGCAGGCG CTGGCGCTGC CCGCGCCCGA ATGGGCGGCA
CACCAGGCCG CGCGCCGGCG CGAGTGGCCG CAGACGGCGC CGATCACCAG CGTGCGTTTC
GAGGGCGCCG ACATCACCTC GCCGCAGCGC CTGGCCGGCG CGCTGGCCAG CCAGCCCGGC
CAGCCGTTCG ACATCGACCG CGCCGAAGCC GACACCCGCG CGCTGGCGGC CTCGGGCGAC
TACCTGCACG CCGACTACGG GCTCGAGGAC CTGCCGGCCG GCACCGGGCT GGTGTTCCGG
CTCGAAGAGA AACCGTGGGG CCCGCACTAC TTCCGGCTCG GTCTCGACGT GGCGAGCGAC
TTTGTCGGCC GCGGCGAGTT CAACCTCAAG CTCAGCCACA ACCGCCACTG GCTCAACGAG
GCCGGCGGCG AGTGGCGCAA CCGGCTGCAG ATCGGCTCGG TGCCGCGCTG GCACACCGAG
TGGTATCAGC CGGCGGGCCT GCTGCTGGCC GATGGCGGCG ACACCTTCGT CTCGGTGCAC
AGCGATGTCG AGCGGCGCCG CATCAACGTC TACGCGCCGC TGGCGCCGAG CGCCGACGCC
GCCGGTGCGC CGCTGCTCGG CCGCTTTGCG CGCGCGCACT GGCGCGCCGG CATCGACCTC
GGCCGCCCGC TCGGCTCGTG GGGCGAGTGG CGGCTGGGCG TGGTGCGCCA GGCCCAGCAT
TTTTCGCCCG AGATCGTGGC CGGCGGCAGC AGCGTGTCGG CGCTCGAGTC GAGCCGGGCG
CAGGAGTGGG CGCTGCGCGG CGCGCTGCTG CTCGACCAGC TCGACCACGT CAGCTTTCCG
CGCCGCGGCT GGCGCGTGCG GCTGGTCGGC GAGGTCGGCC GGCGCTGGGT GGCGGAGTCG
GTGCTGGCCG GCGGCACCGA GTCCTTCCAT CGCCTGGAGG CCGACGCCAA CACCGTCACC
AGCGCGGGCC CGCACACGCT CGACGCCAGC CTGCGCCTGC GCCATGCGCA CCAGGGCCTG
ATCCAGGGCC TGGGCTACTA CACGCTGGGC GGTTTCCACA ACCTGTCGGG CTACCAGGCC
GAGCAGCTGT CGGGCAACGA GGTGCTGCTG GGCCGGCTGA CCTACACCGT GCGGCTGAAC
CAGCGGCCGG TCCTGACCCG CGGCTTCTTT GCCGGTGCCT CGCTCGAGGC CGGCAACGCC
TGGGCGCGCA GCAGCGAGGT CGATCTGGGC CGCCTGCGCG GTGGCGGCAG CGTGTTCCTG
GGCGCCGACA CCGGCCTCGG GCCGCTCTAT TTCGGCCTGA CCTGGGCGCC GCGCGGCAGC
GCCGGGCTGT ACCTGCAGCT CGGCCGTCCG TGA
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| Protein sequence | MNGPCLLPNP CATRPVLHRL AAVLLVLGLC GPARAEPAPT EPAPTAPSPR LKTCGTAQQP
RPCVGLVLSG GGARGLAHVG VLKVLERERI PVDLIAGTSM GAIIGGLFAS GMGAAELERE
LLALDWEALF ASRVPRETLS QRRKEEDFEI SPAVEIGLAR DGSPMLPLGS VSSRGLELLL
RRYTLPVRTA PHFDALPIPF RAVATDMESG APVVFERGDL AQALRASMSV PAVFPPTDVD
ARVLGDGGLV DNLPVDVVRA LGAQVVIAVN IGTPLAARDT LGTVLGLTAQ MINILTEQNV
QRSIAGLDAE RDLLIAPELG KITAADFGRV RELITLGESG AQALQPRLQA LALPAPEWAA
HQAARRREWP QTAPITSVRF EGADITSPQR LAGALASQPG QPFDIDRAEA DTRALAASGD
YLHADYGLED LPAGTGLVFR LEEKPWGPHY FRLGLDVASD FVGRGEFNLK LSHNRHWLNE
AGGEWRNRLQ IGSVPRWHTE WYQPAGLLLA DGGDTFVSVH SDVERRRINV YAPLAPSADA
AGAPLLGRFA RAHWRAGIDL GRPLGSWGEW RLGVVRQAQH FSPEIVAGGS SVSALESSRA
QEWALRGALL LDQLDHVSFP RRGWRVRLVG EVGRRWVAES VLAGGTESFH RLEADANTVT
SAGPHTLDAS LRLRHAHQGL IQGLGYYTLG GFHNLSGYQA EQLSGNEVLL GRLTYTVRLN
QRPVLTRGFF AGASLEAGNA WARSSEVDLG RLRGGGSVFL GADTGLGPLY FGLTWAPRGS
AGLYLQLGRP
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