| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_0388 |
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| Symbol | |
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| ID | 6160571 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | - |
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| Start bp | 425522 |
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| End bp | 427894 |
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| Gene Length | 2373 bp |
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| Protein Length | 790 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 641663137 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_001789428 |
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| Protein GI | 171057079 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 0.0159193 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGTCGAGCC GAACCGATCC CGCCAACCTG GACACCGCTG CCACGCCGCA GGCCGCCCAA
CCGCGCGGCG ATGTCTCGGC GCAGATGGTC GACCTGTTCT ATCGCCAGTC GCCCGCCGCG
CTGCTGGGCG GCGCGATCGG CGCGCTGCTG GTCGTGCTGG CGCTGCAGGA CGCCCTGCCG
GCGCTCTGGC TGCGCAGCTG GCTGCTGGCG GCCGAGCTGC TGATCGTCGG CCGACTGACC
ACCACGCTGC ACTACATGCA CGGCGGCGCC GAGCGCCACA GCCTGGCGCG GTGGCGGCAG
CTGGCGCTGG TCTTCACGAT CGCCCAGGGT CTGACCTGGG GCAGCCTGGG CCTGATGAGC
CTGGCGGTGC CGACCGCGCA GGACGAAGCC CTGATCCTGG TCTGCCTGCT GGTGATCGTG
GCCGGCAGTG CCGCGCTGGT GGGCACGCTG CCGCTGCTGG TGCCGCTGTT CGGCGTGCTC
ACGCTGCTGC CGATCACGCT CGTCATGGCG CTGGGCAGCA GCGGCGCGCA GCACTTCCTG
GCGTTCTGCT CGTTCACGTT CATGCTGACG GTGACGGTCA GCCTGCCGCG CAGCATGCAA
CGCGCGATCC GGGCCCGCCA CAGCGCCAGC CTGGCCCAGC GCGACACCCT GCAGCGCCTT
GAAATGGCCG AGCAGATGGC CCATGTCGGC CACCTGGTGT GGGACGCCGG CGCCGCGCAG
GCACAGCTGT CGGCCGGCGC ACAGCGCATG CTCGGGCTCG ACGGCGTCGG CGCCCTCGAA
CACCGCGACA TCGTCGAGCT GGTGGTGCCC GCCGACCGCG AACGCGTGCG GCTGCTGATC
CGCAACTCGC TGCAGCAGAC CCAGAGCCAG CTGCGCTACG AGACCCAGGT GTCGACACCC
GCAGGCGTGC GCGACCTGAT GGTGGTGCAG CACCTCGAGA CCGGCGCCGA CGGCCGCGTC
ACGCGCCTGA TGTCGACGCT GCAGGACACC AGCGAGCTCA AGCAGACCCA GCGCGAACTG
CAGAAGCTGG CGTTCAACGA CCCGCTCACC GGCCTGGGCA ACCGCGCCTG GTTCATGCAG
GCGCTGGCCG GCATGCTCAG GCAGGGCGAA CGCAGCGCGC TGCTGATGCT CGACCTCGAT
CACTTCAAGG CGATCAACGA CACCCTCGGC CACCACGCCG GCGATCTGCT GCTGGGCATG
GCAGCGCAGC GGCTGCAGCG GGTCCTGGGC GACACGGCCT CGCTGGCGCG GCTCGGTGGC
GACGAGTTCG CGATCATCCT GCCGGCCATC GCCAGCAGCG CCGCCGCGGC CCAGCAGGCC
CAGGCGCTGA TCGACACCCT GACACGGCCG TTCTCGGTGG CGGGCGTGGA GGTCTACGTG
TCGGCCAGCA TCGGCATCGC CGTCAGTCCG CAGGACGCCG ACGACACCGA GGCGCTGCTG
CGCTGCGCCG ACGTGGCGAT GTTCGACGCC AAGGGCCTCG GCCGCGCCGG CTACCAGTTC
TACGCCGCCC AGCAGAGCGA GCGCGCCCGC GAGCGGGTGC TGCTCGAAGG CGACCTGCGG
CGCGCGATCG AACGCGGCGA ACTCGAGCTG CACTACCAGC CCAAGGTCGA CATGCGCACC
GACCGGGTGG TCGGTGCCGA GGCCCTGCTG CGCTGGCACC ACGCCGAGCG CGGCATGGTG
CCGCCGGACC GCTTCATCCC GGTGGCCGAA GACACCGGCC TGATCATCCC GATCGGCGAA
TGGGTGCTGC GCACCGCCTG CACCGCCGCC ACCCACTGGA ACCGCACCCG CCGCGCGCGC
GGCCAGGAGG CACTCAAGAT CGCCGTCAAC CTGTCGCCGC GCCAGTTCTG GTCGCCGCAC
TTCGTGGCGA TGGTGCGCGC CGTGATGCAC GAGACCGGCT GTCGGCCGGA GTGGATCGAA
CTGGAGATCA CCGAAAGCCT GCTGATCGAC ACCCGCGGCC AGGTCAGCGA GATCCTCGCC
GAGCTGAGCC GGCTCGGCTT CACGCTGGCG ATCGACGACT TCGGCACCGG CTATTCGGCG
CTCGGCTACC TGACGCGGTT CCCGATCAGC ACGCTGAAGA TCGACCGTTC CTTCGTCAAC
GAAGTCGCCA CCCACCCCGC CCGCGCCAGC CTGGTGCGCG CCATCGTGGC GATGGGCCAC
AGCCTGCAGC TCGAGCTGGT CGCCGAAGGG GTCGAGACCC ACGAGCAGGT ACAGGTCCTG
CGCGAGATGG GTTGCCAGCT GGCGCAGGGC TGGCTCTACG GCCGGCCCCA GGCACGCGCC
TTGTTCGAGG CCGCGCATGC GCCTGCCGAG CTCCCGGTCG TCACCGAATC CGCCCCGTCG
AGCCAGACTG ACCATTTCCG TCACGCCGCC TGA
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| Protein sequence | MSSRTDPANL DTAATPQAAQ PRGDVSAQMV DLFYRQSPAA LLGGAIGALL VVLALQDALP
ALWLRSWLLA AELLIVGRLT TTLHYMHGGA ERHSLARWRQ LALVFTIAQG LTWGSLGLMS
LAVPTAQDEA LILVCLLVIV AGSAALVGTL PLLVPLFGVL TLLPITLVMA LGSSGAQHFL
AFCSFTFMLT VTVSLPRSMQ RAIRARHSAS LAQRDTLQRL EMAEQMAHVG HLVWDAGAAQ
AQLSAGAQRM LGLDGVGALE HRDIVELVVP ADRERVRLLI RNSLQQTQSQ LRYETQVSTP
AGVRDLMVVQ HLETGADGRV TRLMSTLQDT SELKQTQREL QKLAFNDPLT GLGNRAWFMQ
ALAGMLRQGE RSALLMLDLD HFKAINDTLG HHAGDLLLGM AAQRLQRVLG DTASLARLGG
DEFAIILPAI ASSAAAAQQA QALIDTLTRP FSVAGVEVYV SASIGIAVSP QDADDTEALL
RCADVAMFDA KGLGRAGYQF YAAQQSERAR ERVLLEGDLR RAIERGELEL HYQPKVDMRT
DRVVGAEALL RWHHAERGMV PPDRFIPVAE DTGLIIPIGE WVLRTACTAA THWNRTRRAR
GQEALKIAVN LSPRQFWSPH FVAMVRAVMH ETGCRPEWIE LEITESLLID TRGQVSEILA
ELSRLGFTLA IDDFGTGYSA LGYLTRFPIS TLKIDRSFVN EVATHPARAS LVRAIVAMGH
SLQLELVAEG VETHEQVQVL REMGCQLAQG WLYGRPQARA LFEAAHAPAE LPVVTESAPS
SQTDHFRHAA
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