Gene Lcho_0381 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_0381 
Symbol 
ID6163877 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand+ 
Start bp417125 
End bp417754 
Gene Length630 bp 
Protein Length209 aa 
Translation table11 
GC content71% 
IMG OID641663130 
ProductN-acetyl-anhydromuranmyl-L-alanine amidase 
Protein accessionYP_001789421 
Protein GI171057072 
COG category[V] Defense mechanisms 
COG ID[COG3023] Negative regulator of beta-lactamase expression 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones26 
Fosmid unclonability p-value0.0550988 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACACCCG GGTGCGGCAT GCGCCGCAGC GGCGCATGGT CACGTGGCTG GCATCGCGAT 
GCGCGCCGGG TGCCGAGCCC GAACTTCGGG TCGCGGCCGG TGGGTGCATC GATCGATCTG 
GCGGTGGTGC ATTCGATCAG CCTGCCGCCC GGCGTGTACG GCGGTGACGC GATCGAGCGC 
TTCTTCACCA ACCGGCTCGA CCCGGCCGCG CATCCCTATT TCGCCACCCT TGCCGGACTG 
CAGGTGTCGG CCCATTTCGT CATCCGGCGC GATGGCGAAC TGCTGCAGTT CGTCGATGTG 
CGCGAGCGTG CCTGGCATGC CGGCGCATCG AGTTGGCGGG GCCGTTCCAA CTGCAACGAC 
CACAGCCTGG GCATCGAGCT CGAAGGGCTC GAGGGGCAGC GTTTCGAGCC CGCGCAATAC 
CGCGTGCTGG CGGGCCTGCT GCGCGATGCA CGCACGGCCT GGCCGCTGCG GGAGGTGGTC 
GGTCACGAGC ACATCGCACC GGGGCGCAAA CACGATCCCG GCGCCGGTTT CGACTGGTGC 
CGGCTGGCCC GTCATCTGCG CGGCGCGCGC CTGTGGGTGC CCGCCGAGGT GCTCGCCCAG 
CCGTGCCGTG CGGTCGTGCG CAGGGCCTGA
 
Protein sequence
MTPGCGMRRS GAWSRGWHRD ARRVPSPNFG SRPVGASIDL AVVHSISLPP GVYGGDAIER 
FFTNRLDPAA HPYFATLAGL QVSAHFVIRR DGELLQFVDV RERAWHAGAS SWRGRSNCND 
HSLGIELEGL EGQRFEPAQY RVLAGLLRDA RTAWPLREVV GHEHIAPGRK HDPGAGFDWC 
RLARHLRGAR LWVPAEVLAQ PCRAVVRRA