| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_0364 |
|---|
| Symbol | |
|---|
| ID | 6162687 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Leptothrix cholodnii SP-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010524 |
|---|
| Strand | - |
|---|
| Start bp | 398884 |
|---|
| End bp | 399822 |
|---|
| Gene Length | 939 bp |
|---|
| Protein Length | 312 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 641663113 |
|---|
| Product | thioredoxin domain-containing protein |
|---|
| Protein accession | YP_001789404 |
|---|
| Protein GI | 171057055 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG3118] Thioredoxin domain-containing protein |
|---|
| TIGRFAM ID | [TIGR01068] thioredoxin |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 0.0000110184 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | decreased coverage |
|---|
| |
Sequence |
| Gene sequence | ATGATCGATA TCACCCTCCA GAACTTCGAA TCCGAACTGA TCCATGGATC GCAGCAGCAG
CCCGTGCTGC TCGACATCTG GGCGCCCTGG TGCGGCCCGT GCAAGCAGCT CGGCCCGGTG
CTCGAAAAGC TCGAGGCCGC CTACGAAGGC CGCTTCGTGC TCGCCAAGCT CAACAGCGAC
GAGGTGCCCG AGATCTCGAG CCAGCTCAGC CAGATGTTCG GCGTGCGCTC GATCCCGTTC
TGCGTGATGT TCTCGCAGGG CCAGCCGGTC GACGGCTTCG TCGGCGCGAT CCCCGAGGAC
AAGATCCGCG AGTTCCTCGA CAAGCACGTG CCCAGCCTCG AATCGCTCGA AGCCGAGGCC
GACCTCGAAG AGGCCGCCGA ACTGGCCGAG GACAACCCCG ACGCCGCGCT GGCCAAGCTG
CAGGAGGCGG TCGCGATCGA CCCGGCCAAC GACGCCGCGC GCTACGACTA CATCAAGCTG
CTGCTGCAGA TGAACCGGCT GGCCGAGGCG CGCCGGGCCT ATCAGCCGGT GGCGAGCAAG
GCGCTCCACG ACACCCGGCT GGCCGCGCTC GGCGCCTGGC TCGATGCCGG CGAAGCGGCG
CAGCAGGCCC GCCCGGCGGC CGAGCTGGAC GCCGCCATCG CCGCCAACAA GCGCGATTTC
GCGGCCCGCT TCGAGCGCGC CCAGGTGCTG TTCGCGCAGC AGGACCTGAC CGCCGCGATG
GACGAGCTGC TCGAGATCCT GATGCGCGAC AAGGCCTGGT CGGAAGGCCT GGCGCGCAAG
ACCTACGTGG CGATCCTCGA ACTGATGACC AAGCCCGCAC CCAAGCCCGC GGCGGCAGAA
GCCAAGGGCG CGCTGGAACT CACCGGCAAG ACCGCCGTCG CGCCGGCCGA TCCGCTGCTG
GATCAGTACC GCCGCAAGCT CAGCATGGTG CTGTTCTGA
|
|---|
| Protein sequence | MIDITLQNFE SELIHGSQQQ PVLLDIWAPW CGPCKQLGPV LEKLEAAYEG RFVLAKLNSD
EVPEISSQLS QMFGVRSIPF CVMFSQGQPV DGFVGAIPED KIREFLDKHV PSLESLEAEA
DLEEAAELAE DNPDAALAKL QEAVAIDPAN DAARYDYIKL LLQMNRLAEA RRAYQPVASK
ALHDTRLAAL GAWLDAGEAA QQARPAAELD AAIAANKRDF AARFERAQVL FAQQDLTAAM
DELLEILMRD KAWSEGLARK TYVAILELMT KPAPKPAAAE AKGALELTGK TAVAPADPLL
DQYRRKLSMV LF
|
|---|
| |