| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_0363 |
|---|
| Symbol | |
|---|
| ID | 6162686 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Leptothrix cholodnii SP-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010524 |
|---|
| Strand | + |
|---|
| Start bp | 397741 |
|---|
| End bp | 398859 |
|---|
| Gene Length | 1119 bp |
|---|
| Protein Length | 372 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 641663112 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001789403 |
|---|
| Protein GI | 171057054 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 0.000011603 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | decreased coverage |
|---|
| |
Sequence |
| Gene sequence | ATGTACCGAC TGCTCACGTC GCTCGAGGAG GCGATCGCCC TCGGCCGCAT CCCGGGCGAA
GTGCCGTTCC TGCGCGCCGA GCGGGCGGTG GTCCATGCGC GGCTCGGTGA GCTGGAGCTG
GCGCGGCGCG AGGTCGCGAT CCTGCGGGGG CTGTCCGAAA CGCAGACCAG TCCGGCCCTC
AACGCATGGC TCTGGCTGGC CGAGGGATTG GCCGACTACT ACGAGAACCT GAGCCTGCGT
GCGCGCGATC GCGTGCACCG TGCGATGGCG CTGGCGGCCT CGCTGAAGTC GGCGCGTGTG
CATGCGCTGG CGGCGGCCTG GCTGGCGCAC ATGAGCTTCC GGGTGCACGA CTACACCGCC
ACCGTGCAGC ACCTGGGCAC CGCGTTGCGC ATGGCCGCGG CCGAGCACCA TGCGGCCCGC
TCGCGCGCCT GCATCGTCGT GGCCGGCGTC TACCACTACG CCGGGCGCGA GGACCTTGCG
CAGCCCTGGT ACCTGCAGGC GCGAACCCAC GCCGCCACCG AGGGCGACGG CGCTGCGCTC
AGTTCGATCA TGTACAACAT GGCGGCGCTG CGGGTGATGG GGGTGCGCCT GGCCGAGCGC
TTCGGCGCGG CCGACGAGCT CAAGGCCAAA CGCGCGAGAC TCGGCACCGA ATCGTCGCTG
TTCCTCGACC AGAGCGTGCG GACCAAGGCG CTCAGCAACC ACCCGCCGAT CCAGCGCGCG
TTGATCCTGA CGGCACACGG CGAGTTTGCC GAGGCGCTCG GCCTCTACGA ACACCACCTG
ACCGAAGCGC TTGCCGAAGG CCTGACCGGC TCCGAATGCC TGTTCCAGGC CGATCGGGCC
TGGTGCCTGC TCGAACTCGG CCGCAGCGAC GAGGCCCTGA GCGCCGCACG GCTGGCCGAT
TCAGCCTTCC TCTACGCCAC CGAGCCCGAA GAAGAGGCCA TCGCGCACGC GCTGCTGTCG
ATGGTCTTCG AGCGCCTGGG TCTGCCCGAC GTGGCGCTCG TCCATGCCGA TGCGGCGCAG
CGCATGCACG GGGTCTACCA GGCGCACTGT CGCACCCTGT TGCAGGCGAT GGACGCGGCG
CAGCTCGAAA CCCTGCGCCT CGGCCCGATC GCGGCCTGA
|
|---|
| Protein sequence | MYRLLTSLEE AIALGRIPGE VPFLRAERAV VHARLGELEL ARREVAILRG LSETQTSPAL
NAWLWLAEGL ADYYENLSLR ARDRVHRAMA LAASLKSARV HALAAAWLAH MSFRVHDYTA
TVQHLGTALR MAAAEHHAAR SRACIVVAGV YHYAGREDLA QPWYLQARTH AATEGDGAAL
SSIMYNMAAL RVMGVRLAER FGAADELKAK RARLGTESSL FLDQSVRTKA LSNHPPIQRA
LILTAHGEFA EALGLYEHHL TEALAEGLTG SECLFQADRA WCLLELGRSD EALSAARLAD
SAFLYATEPE EEAIAHALLS MVFERLGLPD VALVHADAAQ RMHGVYQAHC RTLLQAMDAA
QLETLRLGPI AA
|
|---|
| |