| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_0345 |
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| Symbol | secF |
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| ID | 6160690 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | + |
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| Start bp | 378754 |
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| End bp | 379788 |
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| Gene Length | 1035 bp |
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| Protein Length | 344 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 641663094 |
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| Product | preprotein translocase subunit SecF |
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| Protein accession | YP_001789385 |
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| Protein GI | 171057036 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0341] Preprotein translocase subunit SecF |
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| TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family
[TIGR00966] protein-export membrane protein SecF |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 29 |
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| Fosmid unclonability p-value | 0.105677 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGAGTTTT TCCGTTTCCG GCGCGACATC CCGTTCATGC GGCATGCGCT GGTCTTCAAT
GTCATCTCGT TCCTGACCTT CGCGGCAGCG GTGTTCTTCC TGATCACGCG CGGCCTGCAC
CTGTCGATCG AGTTCACCGG CGGCACGGTC ATCGAGACCG AATACGCGCA GAGCGCCGAC
ATCGCCCGCG TGCGCGGCAC CATCGAGACG ATGGGCCTGG GCGAGGTCCA GGTGCAGAAG
TTCGGCACCT CGCGCGACGT GCTGATCCGC CTGCCGCTGC GTGAAGGCGT CAAGCAGAAC
GAGCTGGTCG GGCGGGTCTT CACGCAGCTG TGCACGGCCG AGCAGGGCAC GGTCAGCCAG
CAGCAGACCA CCACCGACAA GGGCGAGACG ATCAGCCGCC AGGTCTGCCA GACCGCCGCG
GGTGCCGAGC CGCTGAAGCT CTCGCGCAGC GAGTTCGTCG GCCCGCAGGT CGGCAAGGAA
CTGGCCGAGG ACGGCGCCAA GGCGCTGGCG TTCGTGATCG TCGGCATCAT GATCTACCTC
GCGCTGCGCT TCGAATGGAA GTTCGCGGTC GCGGCGATCA TCGCCAACCT GCACGACGTC
ATCATCATCC TGGGCTTCTT CGCGTACTTC CAGTGGGAGT TCTCGCTGTC GGTGCTGGCG
GCGGTGCTGG CGGTGCTGGG CTACTCGGTC AACGAGTCGG TGGTGATCTT CGACCGCATC
CGCGAGGCCT TCCGCCGCTA CCGCAAGATG ACGACTGTCG AGGTGATCGA CCACGCCATC
ACCAGCACGA TGAGCCGCAC CATCATCACC CACGGCTCGA CCCAGATGAT GGTGCTGTCG
ATGCTGCTGT TCGGTGGCCC GACGCTGCAC TACTTCGCGC TGGCGCTGAC GATCGGCATC
CTGTTCGGCA TCTATTCGTC GGTTTTCGTG GCGGCGGCGA TCGCCATGTG GCTGGGCGTC
AAGCGCGAGG ATCTGGTGAG CACCCCGCGC AAGGACCACG ATCCGAACGA CCCGAACACG
GGTGCCGTGG TCTGA
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| Protein sequence | MEFFRFRRDI PFMRHALVFN VISFLTFAAA VFFLITRGLH LSIEFTGGTV IETEYAQSAD
IARVRGTIET MGLGEVQVQK FGTSRDVLIR LPLREGVKQN ELVGRVFTQL CTAEQGTVSQ
QQTTTDKGET ISRQVCQTAA GAEPLKLSRS EFVGPQVGKE LAEDGAKALA FVIVGIMIYL
ALRFEWKFAV AAIIANLHDV IIILGFFAYF QWEFSLSVLA AVLAVLGYSV NESVVIFDRI
REAFRRYRKM TTVEVIDHAI TSTMSRTIIT HGSTQMMVLS MLLFGGPTLH YFALALTIGI
LFGIYSSVFV AAAIAMWLGV KREDLVSTPR KDHDPNDPNT GAVV
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