Gene Lcho_0344 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_0344 
SymbolsecD 
ID6161145 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand
Start bp376828 
End bp378729 
Gene Length1902 bp 
Protein Length633 aa 
Translation table11 
GC content69% 
IMG OID641663093 
Productpreprotein translocase subunit SecD 
Protein accessionYP_001789384 
Protein GI171057035 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG0342] Preprotein translocase subunit SecD 
TIGRFAM ID[TIGR00916] protein-export membrane protein, SecD/SecF family
[TIGR01129] protein-export membrane protein SecD 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones31 
Fosmid unclonability p-value0.296213 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAACCGTT ATCCCTGGTG GAAGTACCTG ATCCTCGCCA TCGCGGTGCT GGTCGGGTCG 
CTTTACACCC TGCCCAATTT CTTCGGCGAA GCGCCGGCCG TGCAGGTCTC GAGCGGCAAG
GCGACCGTGA AGGTCGATGC CTCGCTGGTG CCGCGCGTGC AGCAGGCGCT CGCCGGTGCC
GGCCTGTCGC CCGACTTCGT GCAGCTCGAG GGCCTGTCCG TGCGCGCCCG CTTCGGCGAC
ACCGACACCC AGCTCAAGGC GCGGGATGCG GTCGTCAAGG CGCTCAATCC GGATCCGTCC
GACCCGAGCT ACATCGTCGC GCTGAACCTG ATCTCGCGTT CGCCGCAGTG GCTGACGGCG
ATGCGCGCGC TGCCGATGTA CCTGGGCCTG GACCTGCGCG GCGGCGTGCA CTTCCTGATG
CAGGTCGACA TGAAGGCGGC GCTGACCAAG AAGGCCGAGT CGCTGACCGG CGACCTGCGC
GCGCTGCTGC GCGACAAGTC GATCCGCCAT GCCGGCATCG TGCGCAACGG CGATGGCGTC
GAGGTGCGCC TGCGCGACGC GCCAACCCAG GCCCGCGCGC TGGCGCTGCT GCGCGAGCAG
CAGCCCGACC TGCTGTGGGT CGAGTCCACC GACGGCACCG AATTCAAGCT CGCCGGCACG
CTCAAGCCCG AGGCCGCGCG CAAGGTCCAG GAACAGGCCG TCACGCAGAA CATCAACACC
CTGCACAACC GCATCAACGA GCTCGGCGTG GCCGAGCCGG TGATCCAGCA GCAGGGCCTC
GACCGCGTGG TGGTGCAGCT GCCGGGCGTG CAGGACGTCG CCAAGGCCAA GGACATCATC
GGCCGCACGG CCACGCTCGA GGTGCGCCTG GTCGACGACA GCACCGAGGC GCAGGCGGCG
CTGTCGGGCG GTGGCCCGGT GCCGTTCGGC ACCGAGCGCT ACACCGAACG CGGTGCGCGC
GCGATCATCG TCAAGCGTCA GGTCATCCTG ACCGGCGAGA ACCTGACCGA CGCGCAGGCC
GGCTTCGACG AGAACCAGCA GCCCGCCGTG CACCTCACGC TCGATGCCCG CGGCGCGCGC
ATCTTCCGCG ACGTCACGCG CGAGAACATC AACAAGCGCA TGGCCATTCT CCTGTTCGAG
AAGGGCAAGG GCGAGGTCGT CACCGCGCCG GTGATCCGCA GTGAAATCGG CGGCGGGCGG
GTGCAGATCT CGGGTTCGAT GTCGCCGGTC GAGTCGGCCG ACACCGCGCT GCTGCTGCGC
GCGGGCTCGC TGGCCGCGCC GATGGAGATC ATCGAGGAGC GCCTGATCGG CCCCAGCCTG
GGCGCCGAGA ACATCGCCAA GGGCTTCGAC AGCGTGCTGT ACGGCTTTGT CGCGATCGCG
ATCTTCATGT GCTGCTACTA CCTGCTGTTC GGCGTCTTCT CGACCCTGTC GCTGGGCGTG
AACCTGCTGC TGCTGGTGGC GGTGCTGTCG ATGATGCAGG CCACGCTGAC GCTGCCGGGC
ATCGCCGCCA TCGCGCTGGT GCTGGGCATG GCGATCGACG CCAACGTGCT GATCAACGAG
CGCGTGCGCG AGGAACTGCG TGCCGGCGCC TCGCCGCAGA TGGCGATCCA CACCGGCTAC
GAACGCGCCT TCGCGACCAT CCTCGACTCG AACGTCACCA CGCTGATCGC CGGCCTGGCG
CTGCTCGCCT TCGGCTCCGG CCCGGTGCGC GGCTTCGCGG TGGTGCACTG CCTGGGCATC
CTGACCTCGA TGTTCTCGGC CGTGATGTTC TCGCGCGGCC TGGTGAACCT CTGGTACGGG
CGCAAGAAGA AGCTGCAGAA GGTCTCGATC GGCCAGGTGT GGCGACCGGC CGGTGCGGTC
GCCGAACCCG GCTCCGGCGT CAGCGTCGGC AAGCAGGCCT GA
 
Protein sequence
MNRYPWWKYL ILAIAVLVGS LYTLPNFFGE APAVQVSSGK ATVKVDASLV PRVQQALAGA 
GLSPDFVQLE GLSVRARFGD TDTQLKARDA VVKALNPDPS DPSYIVALNL ISRSPQWLTA
MRALPMYLGL DLRGGVHFLM QVDMKAALTK KAESLTGDLR ALLRDKSIRH AGIVRNGDGV
EVRLRDAPTQ ARALALLREQ QPDLLWVEST DGTEFKLAGT LKPEAARKVQ EQAVTQNINT
LHNRINELGV AEPVIQQQGL DRVVVQLPGV QDVAKAKDII GRTATLEVRL VDDSTEAQAA
LSGGGPVPFG TERYTERGAR AIIVKRQVIL TGENLTDAQA GFDENQQPAV HLTLDARGAR
IFRDVTRENI NKRMAILLFE KGKGEVVTAP VIRSEIGGGR VQISGSMSPV ESADTALLLR
AGSLAAPMEI IEERLIGPSL GAENIAKGFD SVLYGFVAIA IFMCCYYLLF GVFSTLSLGV
NLLLLVAVLS MMQATLTLPG IAAIALVLGM AIDANVLINE RVREELRAGA SPQMAIHTGY
ERAFATILDS NVTTLIAGLA LLAFGSGPVR GFAVVHCLGI LTSMFSAVMF SRGLVNLWYG
RKKKLQKVSI GQVWRPAGAV AEPGSGVSVG KQA