Gene Lcho_0342 details

Gene Information

• Locus tag: Lcho_0342
• ID: 6161143
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Leptothrix cholodnii SP-6
• Kingdom: Bacteria
• Replicon accession: NC_010524
• Strand: -
• Start bp: 374197
• End bp: 376251
• Gene Length: 2055 bp
• Protein Length: 684 aa
• Translation table: 11
• GC content: 76%
• IMG OID: 641663091
• Product: diguanylate cyclase/phosphodiesterase
• Protein accession: YP_001789382
• Protein GI: 171057033
• COG category: [T] Signal transduction mechanisms
• COG ID: [COG2200] FOG: EAL domain

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: 32
• Fosmid unclonability p-value: 0.399424
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGCCTGCCA AGACGGATAC GCCCCTCCCC CGCCACACCG CCGAGCCGAC CGTCCCGATG 
CTCGGTGCAC GCACGCCCAG GACCAGCCCG GCACGGGTCC TGCTGCAGGT GGGCGCGCGC 
CTGCGCGGGC CCCTGGCGAG CGCGCTGTTC GCCCGCGGCA TGCAACCGGT GCTCGGCCAC 
GCCGGCCAGC GCGGCCTGGC GCTCGAGATC CGCGAGTTCG GCCCGCCCGT GTCCGGCGAG 
CCGCCCACCC GGCCCGGTGC GACACCGGTC GCCCCCGCGC TGCTCGCGCT GCTGCCCGGC 
GCAGCCCGCA GCGACGGCAT CGACTGGCGC CACGAGGCCC TGCGGGCCGG CGCGCTGTCG 
CTGCTGGTGC TCGACGACAC GGCCGCCGAC ATCGAGACGA TGGCCCGCCT GGCGGCCCGG 
CTGACGCGGC TGACCCGGCA GCCGGTGCAG CTGCCGCCCG GGGCCGCTGC GCAGCGGCCG 
GCCCCCGCGA CACACGGACA CACGACACCC GGACACGCCT CCCCCGAACG CGCGCCGACG 
AGCAGTCGCA GCCTGCACGG CGGCAGCGCG GCCCGGCCGG CGCCCGAGCT GATCGCCGCC 
ATCGACGAGG CCGTCGGCCA GGCGCGCCAG CTCGGCGCGA TGGGCGCGCT GCTGCTCGTC 
GGCCTGAACC GCCTGGCCGA GATCGACACC GCGCTCGGCA CCGCGATCCG CCGCGACATG 
GTCGACGCGA TCGAGACGCG GCTGACCGAC GTGCTGCGCC AGGAGGCCGA CCGCCACCGG 
CTGCGCCCGG CCGCCGAGCT GTACCGCTGG GACGGCGGCT TCGCGATCGT CTGGCCGCAG 
ATCTCGCACG GCGAGCAGGC CCTGCAGCTG GCGCGCCAGC TGCTGAAGCA GGCCGGCGAG 
CCGCTCACGG TGGCCGGCGA AGAAGCCAGC CTGAGCGCCA ACGCCGGCAT CGGCCTGCTG 
CCGCACGACG GCGTCGAAGC CACCGCGCTG CTCGAGGCGG CCGAACGGGC GCTGCACCAC 
GCACGCAGCC GCGGCCCCGG CCAGTGCCAG TTCCACGAGC AGGACCTCGC CCCGCGCCAG 
CGCGAGCGCC TGCGGCTCGA GGCGCGCCTG CGCCGCGCCA TCGCCGACGG CAGCTTCGAG 
CTGCACTACC AGCCGCAGGT CGACCTGCAG ACCGGCGCGC TGACCGGCGC CGAAGCGCTG 
CTGCGCTGGC CCGACGGCGC CGGCGGCAGC GTGCCGCCGA GCCTGTTCAT CCCGATGGCC 
GAAGCCAACG GCCTGATCGT CGCGCTGGGC GACTGGGTGC TGCAGCGGGT CTGCCGGCAG 
ATCCGCCGCT GGCTCGACCG CGGGCTCGAG GTGCCGCGCA TCGCCATCAA CGTCACGCCG 
CAGGAGCTGC AGCAGCCCGA CTTCGTGGCG CGCGTGCTGC GCTCGCTGGC CGACGCCGGG 
CTGGCCGGTC GCCACCTCTG CATCGAGCTG ACCGAAGCCG CGCTGATGAC CGACACCGCC 
GCCGCCCGCG CCGCCACCGC CACGCTGAGC ACGCGCCTGC TGATGCTGCG CGAGGCCGGC 
GTGCAGCTGG CGATCGACGA CTTCGGCACC GGCTGCTCGT CGCTGGCGAT GCTGCGGCGC 
CTGCCGATGG ACGGCCTGAA GATCGACCGC TCCTTCGTGG CCGACGTCGA CGGCGACGGC 
GCGGCGATCT GCGCGGCCAT CATCGGCCTG GCCCACACGC TGGGCCTGCG GGTGATCGCC 
GAAGGCATCG AGACCGATGC CCAGCTGGCC TTCCTGCGCG AGCAGGGCTG CGACGAGTTC 
CAGGGCCATG TGCTGTCGCC GGCACTCGGC GCCACCATCA TGGGCGAGGT GCTGGCCGGC 
GCGGCGATCC AGTACCGCGT GCCGCCGGCG CCGGCCCTGC CGACCGCCCC GGCCGACCCC 
GCCGCGCCGT CGATGCCCGA ACTGGCCCAG CTGCACCGCA GCCTGGCGCG CCGGCCCCGG 
CAGGAAAGCG GCGCGGCGCT GCAATGGCCG GCGCCGCTTC AGGCCGGCGA ACCGACGTTC 
ACTGCGCCAA CTTGA 

 

Protein sequence

MPAKTDTPLP RHTAEPTVPM LGARTPRTSP ARVLLQVGAR LRGPLASALF ARGMQPVLGH 
AGQRGLALEI REFGPPVSGE PPTRPGATPV APALLALLPG AARSDGIDWR HEALRAGALS 
LLVLDDTAAD IETMARLAAR LTRLTRQPVQ LPPGAAAQRP APATHGHTTP GHASPERAPT 
SSRSLHGGSA ARPAPELIAA IDEAVGQARQ LGAMGALLLV GLNRLAEIDT ALGTAIRRDM 
VDAIETRLTD VLRQEADRHR LRPAAELYRW DGGFAIVWPQ ISHGEQALQL ARQLLKQAGE 
PLTVAGEEAS LSANAGIGLL PHDGVEATAL LEAAERALHH ARSRGPGQCQ FHEQDLAPRQ 
RERLRLEARL RRAIADGSFE LHYQPQVDLQ TGALTGAEAL LRWPDGAGGS VPPSLFIPMA 
EANGLIVALG DWVLQRVCRQ IRRWLDRGLE VPRIAINVTP QELQQPDFVA RVLRSLADAG 
LAGRHLCIEL TEAALMTDTA AARAATATLS TRLLMLREAG VQLAIDDFGT GCSSLAMLRR 
LPMDGLKIDR SFVADVDGDG AAICAAIIGL AHTLGLRVIA EGIETDAQLA FLREQGCDEF 
QGHVLSPALG ATIMGEVLAG AAIQYRVPPA PALPTAPADP AAPSMPELAQ LHRSLARRPR 
QESGAALQWP APLQAGEPTF TAPT