Gene Lcho_0341 details

Gene Information

• Locus tag: Lcho_0341
• ID: 6161142
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Leptothrix cholodnii SP-6
• Kingdom: Bacteria
• Replicon accession: NC_010524
• Strand: +
• Start bp: 372330
• End bp: 374213
• Gene Length: 1884 bp
• Protein Length: 627 aa
• Translation table: 11
• GC content: 74%
• IMG OID: 641663090
• Product: peptidase S8/S53 subtilisin kexin sedolisin
• Protein accession: YP_001789381
• Protein GI: 171057032
• COG category: [O] Posttranslational modification, protein turnover, chaperones
• COG ID: [COG1404] Subtilisin-like serine proteases

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: 35
• Fosmid unclonability p-value: 0.835088
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGAATCACA AACGGGAATC CCTGCGCACG AACCCCTGGG CCAGCACGGC GGCCGACTGG 
GCCTGGGGCA TCGCGATCGG TGCGCTGCTG CTGGCGGCCG GCAGCTCGTG GTCGATGGCG 
CGTGGCGATC GGCGCGATGT CCGCGCCCCG ACCCAGGCGA CCGCCGACGA GGAGGGCACC 
GACCGGGTGA TCGTCAAGTA CCGCAACGCC GATCGCAGCC AGATCGATCC GACCACGCAG 
GGCTCGGTGC GGGTGGCCGG CAACCGCGCC GGCGTGCGCC TGAGCCGGCT GCGCGGCATG 
GCGCACGGCG GTCACGTGCT GCGCGCCGAT CGGCGCCTGT CGCTGGCCGC GGCGCAGCGG 
CTGGCCGACG ACATCCGCAG CGGCGACGCC GAGGTCGAAT ACGCCGAGCC GGACCGCATC 
ATGACGATCC AGCTGGTGCC CAACGACCCT TCGTACGCCA GCCAATGGAA CCTGTTCGAG 
GCCACCGCCG GCCTGAACCT GCCCGCCGCC TGGGACAAGA GCACCGGCGC CGGCGTGGTG 
GTGGCGGTGC TCGACACCGG CGTGCGTCCG CACGTCGACC TGGCCGGCAA CCTGCTGGCG 
GGTTACGACT TCATCAACGA CACCACGGTG GCCAACGACG GCAACGGCCG CGACGCCGAC 
GCCTTCGACC CGGGCGACTG GGCCGCTGCC GGCGCCTGCG GCAGCGGCAG CGCGGCCGAC 
AGCAGCAGCT GGCACGGCAC CCACGTGGCC GGCACGATCG CCGCGCTGAC GCACAACGCC 
CGCGGCGTGG CCGGTGTGGC GTTCGGCGCC CGGGTGCTGC CGGTGCGGGT GCTGGGCCGC 
TGTGGCGGCT ACACCTCGGA CATCGCCGAC GGCATGGTCT GGGCGGCCGG CGGCAGCATC 
ACGGGCGTGC CGGCCAATCC GACGCCGGCG CGCGTGATCA ACCTGTCGCT GGGCGGCAGC 
GGCGCCTGCG GCACCACCAC CCAGAACGCC ATCAACAGCG CCCGCAGCCG CGGTGCGGTG 
GTGGTGGTGG CGGCCGGCAA TTCGGCGGCC AACGCGGCCG GCTTCTCGCC GGCCGGCTGC 
GCGGGGGTGG TCACGGTGGC GGCGGTCGGG CGCAGCGGCG CGCGGGCCTC GTACTCGAAC 
TACGGCACGG TGGTCGACGT CGCCGCGCCG GGTGGCGACG GCAGCTCGGG CATCCAGTCG 
ACCCTCAACG CCGGCAGCAG CACGCCGGGC GCGGACAGTT ATGCGTCGTA CATGGGCACC 
TCGATGGCGA CGCCGCACGT GGCCGGCGTG GTGGCGCTGA TGCTGGCGCG CAACCCGGCG 
CTGACGCCCG ACGAGGTCGA GGCCCGGCTG AAGTCGAGCG CGGCCGCGCG CGGTTTTCCG 
GTGGCGTGTT CGCAGTGCGG CAGCGGCCTG CTCGATGCCA ACCGTGCGAT CGACGCCGCC 
ATCGGCAGCG GCACGACGAC GCCCGCCCCG ACCCCGGCAC CGGCTCCCAC GCCGACCCCC 
GCCCCCACCC CGAGCCTGAC GCAGGTTGCC GAAGTCGAAT CCAACCATGC CCGCTCGTCG 
GCGCAGGCGA TCAGCGCCAA CCCGGCGCAG GTCAACGCCA CCATCGGCAG CACCTCGGAC 
ACCGACTATT TCCGCGTCAC GTTGGCGGCT GGCAGGACCC TGGTCGCCAC GCTCGCGCCC 
AACGCCGGCT CCGACTACGA CCTGTACGCC TACAACGCCG CCGGCACGCG GGTGGCGTCG 
AGCGTGCTGG GCACCGGTGC GGTCGATACC GTATCGGTGC GCAACGCCGG CACCGGCGCG 
ACCACCGTCT ACGTGCGGGT GCTGCGCTAC AGCGGCGGCA CGGGCGCCAC CGGCGGCCGG 
TACACGCTCA AGTTGGCGCA GTGA 

 

Protein sequence

MNHKRESLRT NPWASTAADW AWGIAIGALL LAAGSSWSMA RGDRRDVRAP TQATADEEGT 
DRVIVKYRNA DRSQIDPTTQ GSVRVAGNRA GVRLSRLRGM AHGGHVLRAD RRLSLAAAQR 
LADDIRSGDA EVEYAEPDRI MTIQLVPNDP SYASQWNLFE ATAGLNLPAA WDKSTGAGVV 
VAVLDTGVRP HVDLAGNLLA GYDFINDTTV ANDGNGRDAD AFDPGDWAAA GACGSGSAAD 
SSSWHGTHVA GTIAALTHNA RGVAGVAFGA RVLPVRVLGR CGGYTSDIAD GMVWAAGGSI 
TGVPANPTPA RVINLSLGGS GACGTTTQNA INSARSRGAV VVVAAGNSAA NAAGFSPAGC 
AGVVTVAAVG RSGARASYSN YGTVVDVAAP GGDGSSGIQS TLNAGSSTPG ADSYASYMGT 
SMATPHVAGV VALMLARNPA LTPDEVEARL KSSAAARGFP VACSQCGSGL LDANRAIDAA 
IGSGTTTPAP TPAPAPTPTP APTPSLTQVA EVESNHARSS AQAISANPAQ VNATIGSTSD 
TDYFRVTLAA GRTLVATLAP NAGSDYDLYA YNAAGTRVAS SVLGTGAVDT VSVRNAGTGA 
TTVYVRVLRY SGGTGATGGR YTLKLAQ