Gene Lcho_0306 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_0306 
Symbol 
ID6163191 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand- 
Start bp331951 
End bp332580 
Gene Length630 bp 
Protein Length209 aa 
Translation table11 
GC content69% 
IMG OID641663055 
ProductNAD(P)H dehydrogenase (quinone) 
Protein accessionYP_001789346 
Protein GI171056997 
COG category[I] Lipid transport and metabolism 
COG ID[COG1182] Acyl carrier protein phosphodiesterase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones87 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAGATCC TGCAAGTCAA CTCCAGCGCC CGCAACTTCG CCAACGGCGT GGGCTCGGTC 
TCGAGCCAGC TCGCGGGCGA ACTGGTGGCA CGCCTGCGCG ACGGCGAGCC CACCGCCAGC 
GTGGTGGTTC GCGACCTCGC GCGCACGCCG CACCCGGTGC TGGACGAAGC CGCACTGCAG 
GCGCTGTTCA CGCCTGCCGA CCAGCGCACG CCAGCCCAGG CCGAACGCGT GGCGCTCGAC 
GACGCGCTGA TCGCCGAGAT CCAGGCCGCC GACGTGGTGG TGATCGCAGC ACCGATGTTC 
AACTTCGGCA TCACGGCCCA ACTGAAGAAC TGGATCGACG CGATTGCGCG CGCGAAGGTG 
ACGTTCCAGT ACACCGCGAA CGGCCCCGAA GGTCTGCTCA AGGGCAAGCG CGTGCATGTG 
GTCCTGACGC GAGGGGGCGT CTACCGCGAC CAGGCGTCGG ACAACCAGGT GCCGTATCTG 
CGCCAGGTGC TGGGCTTCCT GGGCATGACC GACGTCGAGT TCATCTACGC CGAGCGCCAG 
GGCATGGGCC CGGAGGCCAG CGCACAAGGC GTGGCCGAGG CCCGCGAACA GATCGCCGCG 
CTGCTGCAAC TCGGCACTGC AACGGCCTGA
 
Protein sequence
MKILQVNSSA RNFANGVGSV SSQLAGELVA RLRDGEPTAS VVVRDLARTP HPVLDEAALQ 
ALFTPADQRT PAQAERVALD DALIAEIQAA DVVVIAAPMF NFGITAQLKN WIDAIARAKV 
TFQYTANGPE GLLKGKRVHV VLTRGGVYRD QASDNQVPYL RQVLGFLGMT DVEFIYAERQ 
GMGPEASAQG VAEAREQIAA LLQLGTATA