| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_0288 |
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| Symbol | lysS |
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| ID | 6160878 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | - |
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| Start bp | 304617 |
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| End bp | 306161 |
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| Gene Length | 1545 bp |
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| Protein Length | 514 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 641663032 |
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| Product | lysyl-tRNA synthetase |
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| Protein accession | YP_001789328 |
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| Protein GI | 171056979 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1190] Lysyl-tRNA synthetase (class II) |
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| TIGRFAM ID | [TIGR00499] lysyl-tRNA synthetase, eukaryotic and non-spirochete bacterial |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 55 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCCACC CGACTCCCCA TCACGCCGCA GCCCCCGTCG CGGCCGACGA AAACCAGCTC
ATGGCCGAAC GCCGCGAAAA ACTCGCCGTG ATGCGCCAGC AGCACCGCGA GGCCGGCACC
GCGGTCTTCC CGAACGACTT CAAGCCCACC GACCACGCCA CCGACCTGCA CCGCCTGCAT
GAAGGCAAGG ACAACGAGGC GCTCGAAGCC GCGCCGATCA CCGCCTGCGT GGCCGGCCGC
ATGATGCTCA AGCGCGTGAT GGGCAAGGCC TGTTTCGCCA CGCTGCAGGA CGGCTCGGCC
GACGGCAACC CGCGCATCCA GCTCTACATC ACGCAGGACA ACGTCGGTGC CGAACTGCTG
GCCGCCTTCA AGCACTGGGA CCTGGGCGAC ATCCTGGGTG CCACCGGCAC GCTGTTTCGC
ACCAAGAGCG GCGAGCTGTC GATCAAGGTG ACCGGCCTGC GCCTGCTCAC CAAGAGCCTG
CGGCCGATGC CCGACAAGCA CCACGGCATG ACCGACCAGG AGCAGAAGTA CCGCCAGCGC
TACGTCGACC TGATGACCGA CGACAGCGCG CGCGAGCGTT TCCGCGCCCG CAGCAAGGCG
GTGGCGAGCA TCCGCGGCTT CATGCTGGAG CACCAGTTCC TGGAGGTCGA GACGCCGATG
CTGCACCCGA TCCCGGGTGG CGCGAACGCA AAGCCGTTTG TCACGCACCA CAACGCGCTC
GACCAGGAGA TGTTCCTGCG CATCGCGCCC GAGCTGTACC TCAAGCGCTT GGTGGTGGGC
GGTTTCGAGC GCGTGTTCGA GATCAACCGC AACTTCCGCA ACGAAGGCAT CTCGGTTCGG
CACAACCCCG AATTCACGAT GATGGAGTTC TACGCGGCGT ACTGGAATCA CCACGACCTG
ATGGACTTCA CCGAGCAGCT GCTGCGCCAC GCCGCCACGC AGGCCACCGG CTCGGCGCGG
GTCAGCTACG CCGGCAAGCC GGTGCATCTG GACGAGCCGT TCGCGCGGCT GTCGGTGCGT
GATTCGCTGG TGGTGCATGC CGGTCTCACC GAAGCCGAAG CCGACGATGC CGCGGTGATC
CACGCCAAGC TGACCTCGCT CGGTGAAGAG CCGCCCAAGC ACTGGAAGCT GGCGGCGCTG
CAGTTCGGCC TGTTCGAGGC GGTGGTCGAA GAGAAGCTCT GGCAGCCGAC ATTCATCATC
GACTACCCGG TCGAGGTGTC GCCGCTGGCG CGCGCATCCG ACGCCAACCC GTCGATCACC
GAGCGCTTCG AGCTGTTCAT CACCGGCCGC GAATTCGGCA ACGGCTTCAG CGAGCTGAAC
GACGCCGAGG ACCAGGCCGC GCGCTTCCAG AGCCAGGTCG CCAACAAGGA CGCCGGCGAT
GAAGAGGCGA TGTTCTACGA CGCCGACTTC ATCCGCGCGC TCGAATACGG CATGCCCCCG
ACGGGCGGCT GCGGCATCGG CATCGACCGG CTGATGATGC TGCTGACCGA CAGCGTGAGC
ATCCGCGACG TGGTGCTGTT CCCGGCGCTG CGGCGCGAGG GCTGA
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| Protein sequence | MSHPTPHHAA APVAADENQL MAERREKLAV MRQQHREAGT AVFPNDFKPT DHATDLHRLH
EGKDNEALEA APITACVAGR MMLKRVMGKA CFATLQDGSA DGNPRIQLYI TQDNVGAELL
AAFKHWDLGD ILGATGTLFR TKSGELSIKV TGLRLLTKSL RPMPDKHHGM TDQEQKYRQR
YVDLMTDDSA RERFRARSKA VASIRGFMLE HQFLEVETPM LHPIPGGANA KPFVTHHNAL
DQEMFLRIAP ELYLKRLVVG GFERVFEINR NFRNEGISVR HNPEFTMMEF YAAYWNHHDL
MDFTEQLLRH AATQATGSAR VSYAGKPVHL DEPFARLSVR DSLVVHAGLT EAEADDAAVI
HAKLTSLGEE PPKHWKLAAL QFGLFEAVVE EKLWQPTFII DYPVEVSPLA RASDANPSIT
ERFELFITGR EFGNGFSELN DAEDQAARFQ SQVANKDAGD EEAMFYDADF IRALEYGMPP
TGGCGIGIDR LMMLLTDSVS IRDVVLFPAL RREG
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