| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_0279 |
|---|
| Symbol | |
|---|
| ID | 6163972 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Leptothrix cholodnii SP-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010524 |
|---|
| Strand | + |
|---|
| Start bp | 292901 |
|---|
| End bp | 293950 |
|---|
| Gene Length | 1050 bp |
|---|
| Protein Length | 349 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 641663023 |
|---|
| Product | ornithine cyclodeaminase |
|---|
| Protein accession | YP_001789319 |
|---|
| Protein GI | 171056970 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG2423] Predicted ornithine cyclodeaminase, mu-crystallin homolog |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 35 |
|---|
| Fosmid unclonability p-value | 0.815207 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCACGC TCCTCACCCC CCACGACATC GCCCGCATCG TTGCCGCCCA GGGCATCGCC
GGGGCCTTGC AGCGCCTGGC CGGCTACATC GAGGCCGACT ACCGCCGCTG GGCACAGTTC
GACAAGACCG CGCGTGTCGC CAGCCACTCC GAATCCGGCG TGATCGAGCT GATGCCCGCC
GCCGACGGCC AGCTCTACAG CTTCAAGTAC GTCAACGGCC ACCCCGGCAA CACCCGGCTC
GGCCTGTCGA CGGTGATGGC TTTCGGCGTG CTGGCCGACG TCGCCACCGG CACGCCGCAG
CTGCTGAGCG AACTCACGCT GACCACCGCG CTGCGCACCG CGGCGATGTC GGCGCTGGCC
GCGCGTGTGC TGGCGCGGCC GGGCAGCCGT ACGATGGCGC TGATCGGCAA CGGCGCGCAG
AGCGAGTTCC AGGCGCTGGC TTTCCACCAC CTGCTGGGCA TCGACGAGAT CCGCCTGTTC
GATATCGACC GCGCCGCCAC CGCCAAGCTG ATGCGCCACC TCGGCGGCGT GCCGGGCCTG
GCGCTGATCG CCTGCGACAG CACCGCGCAG GCGGTGCGCG GCGCGCACAT CGTCACCACC
GTGACGGCCG ACAAGACCTG CGCCACCATC CTGACGCCCG AGATGATCGA GCCCGGCATG
CACCTCAACG CGGTCGGCGG CGACTGCCCG GGCAAGACCG AGCTGCACGC CGATATCCTG
CTCGGCGCCA GCGTGTTCGT CGAATACGAG CCGCAGAGCC GCATCGAGGG CGAGATCCAG
CACCTGCCGG CCGACTTTGC CGTCACCGAG TTCTGGCGCG TGCTGCTGCG TGTGGCGCCG
GGCCGCCGGC GTGACGACGA AGTGACGGTG TTCGACTCGG TCGGCTTCGC GCTCGAAGAC
TTTGCCGCCC TGCGCTGGCT GCGCGACAGC GCCCGCGAGC TGGGCCTGGG CGAAACCATC
GACCTGATCC CGCAGATGGC CGATCCGAAG GACCTGTTCG GCGAGCTGCG GCTGCCGCCG
GCGCAGCACC GGCCCGTGCG CGCGGCCTGA
|
|---|
| Protein sequence | MTTLLTPHDI ARIVAAQGIA GALQRLAGYI EADYRRWAQF DKTARVASHS ESGVIELMPA
ADGQLYSFKY VNGHPGNTRL GLSTVMAFGV LADVATGTPQ LLSELTLTTA LRTAAMSALA
ARVLARPGSR TMALIGNGAQ SEFQALAFHH LLGIDEIRLF DIDRAATAKL MRHLGGVPGL
ALIACDSTAQ AVRGAHIVTT VTADKTCATI LTPEMIEPGM HLNAVGGDCP GKTELHADIL
LGASVFVEYE PQSRIEGEIQ HLPADFAVTE FWRVLLRVAP GRRRDDEVTV FDSVGFALED
FAALRWLRDS ARELGLGETI DLIPQMADPK DLFGELRLPP AQHRPVRAA
|
|---|
| |