Gene Lcho_0274 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_0274 
Symbol 
ID6160544 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand
Start bp288567 
End bp290096 
Gene Length1530 bp 
Protein Length509 aa 
Translation table11 
GC content73% 
IMG OID641663018 
Productprotease Do 
Protein accessionYP_001789314 
Protein GI171056965 
COG category[O] Posttranslational modification, protein turnover, chaperones 
COG ID[COG0265] Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain 
TIGRFAM ID[TIGR02037] periplasmic serine protease, Do/DeqQ family 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones32 
Fosmid unclonability p-value0.408213 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAAACCA AGAACCTGAC GGTCGCGCTG GTCGCGGCCG GCGTGCTGGG TGCCGGCGCC 
GCCACAGCGA TCGGCCTGCC CGACTGGATG AAGGGCCGCC CGGCCGTCAA CACCGAGGCG
ACCCAGGCCG CGGCCCAGAC GCAGCTCGCG CTCGGCACCG TCAATCCGGC CCCCGTGCCG
ATGCTCGCCG GTGACGGCGC GGTGCCCGAC TACCGCGGCA TCGTGCGCAA GTTCGGCCCG
GCGGTGGTCG GCGTGGTGGT CAAGGGCGAA CGCCAGGCCA GCGCCGAGGA ACAGGCGCAG
GGCGGCCTGC CGCCGGGCAT CGAGAACGAC CCGTACTTCC GCTTCTTCCG CGGCATGCCG
GGCCAGCCCG GGCGCGGCCG CGGCGCGCAG CCGAACCAGC CGTTCCGCGG CCAGGGCTCG
GGTTTCATCA TCTCGACCGA CGGCCTGATC CTGACCAACG CCCACGTGGT GCGCGACGCC
AAGGAGGTCA CCGTCAAGCT CAGCGACCGG CGCGAGTTCG TGGCCAAGGT GCTGGGGGTC
GACCCGGCCA CCGACATCGC CGTGCTGCGC ATCGAGGCCA AGGATCTGCC GACCGTGCGC
CTGGGCGACC CGCGCCAGCT CGAAGTGGGC GACCCGGTGC TCGCCATCGG TGCGCCCTAC
GGGCTGGAGC AGAGCGCTAC GCAGGGCATC GTCAGCGCCA AGGGCCGCTC GCTGCCGGGT
GACGCGGTGG TGCCGTTCAT CCAGACCGAC GCGGCCGTCA ACCCCGGCAA CTCGGGCGGC
CCGCTGTTCG ACGGCGGCGG CGCGGTGGTC GGCATCAACG CGCAGATCTA CTCGCAAAGC
GGCGGCTACC AGGGCCTGAG CTTCGCGATC CCGATCAACG TGGCGCTGCA GGTCAAGGAC
CAGATCGTCG CCACCGGCCG CGCCAGCCAC GCCCGGCTGG GCGTGACGGT GCAGGACGTC
GACCAGGCGC TGGCCGAATC CTTCGGTTTG CCCCGGCCGG ACGGCGCGCT GATCTCGAGC
GTGGCGCCCC AGAGCGCCGC GGCGGCCGCC GGCCTGCAGC CCGGTGACGT GATCACCGCG
GTCAACGGCG AGCCGGTGCT GCGCTCGGGT TCGCTGTCGA GCCTGATCGG GCTGTCGACG
CCGGGTCAGA AGGTGCAGCT CAAGGTCTGG CGCGACCACG CCGCCCGCGA CATCGACGCC
AAGCTGGGCA GCGCCGACGA CGGCGCCAAC CCGACCGCCC AGGCCGAGGA CGACGCCCAG
CGCGGCGGCC AGATCGGCCT GGCGCTGCGG CCGCTCACGC CGCAGGAGCG CCGCGACGCC
CAGGTCGAAC AGGGCCTGCT CGTCGAACAG GTGACCGGCG CGGCCAGGAG CGCGGGCATC
GAGGCCGGCG ACGTGCTGCT GGCGATCAAC GGCCAGCCGG TGCGCAGCAT CGAGCAGCTG
CAGTCGGTGC TGATGAAGAA GCCCAAGCGC GTGGCGCTGC TGGTGCAGCG CGACGGCGAC
AAGATCTTCG TGCCGGTGAG CCTGGGCTGA
 
Protein sequence
MKTKNLTVAL VAAGVLGAGA ATAIGLPDWM KGRPAVNTEA TQAAAQTQLA LGTVNPAPVP 
MLAGDGAVPD YRGIVRKFGP AVVGVVVKGE RQASAEEQAQ GGLPPGIEND PYFRFFRGMP
GQPGRGRGAQ PNQPFRGQGS GFIISTDGLI LTNAHVVRDA KEVTVKLSDR REFVAKVLGV
DPATDIAVLR IEAKDLPTVR LGDPRQLEVG DPVLAIGAPY GLEQSATQGI VSAKGRSLPG
DAVVPFIQTD AAVNPGNSGG PLFDGGGAVV GINAQIYSQS GGYQGLSFAI PINVALQVKD
QIVATGRASH ARLGVTVQDV DQALAESFGL PRPDGALISS VAPQSAAAAA GLQPGDVITA
VNGEPVLRSG SLSSLIGLST PGQKVQLKVW RDHAARDIDA KLGSADDGAN PTAQAEDDAQ
RGGQIGLALR PLTPQERRDA QVEQGLLVEQ VTGAARSAGI EAGDVLLAIN GQPVRSIEQL
QSVLMKKPKR VALLVQRDGD KIFVPVSLG