Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lcho_0274 |
Symbol | |
ID | 6160544 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Leptothrix cholodnii SP-6 |
Kingdom | Bacteria |
Replicon accession | NC_010524 |
Strand | - |
Start bp | 288567 |
End bp | 290096 |
Gene Length | 1530 bp |
Protein Length | 509 aa |
Translation table | 11 |
GC content | 73% |
IMG OID | 641663018 |
Product | protease Do |
Protein accession | YP_001789314 |
Protein GI | 171056965 |
COG category | [O] Posttranslational modification, protein turnover, chaperones |
COG ID | [COG0265] Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain |
TIGRFAM ID | [TIGR02037] periplasmic serine protease, Do/DeqQ family |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 32 |
Fosmid unclonability p-value | 0.408213 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAAACCA AGAACCTGAC GGTCGCGCTG GTCGCGGCCG GCGTGCTGGG TGCCGGCGCC GCCACAGCGA TCGGCCTGCC CGACTGGATG AAGGGCCGCC CGGCCGTCAA CACCGAGGCG ACCCAGGCCG CGGCCCAGAC GCAGCTCGCG CTCGGCACCG TCAATCCGGC CCCCGTGCCG ATGCTCGCCG GTGACGGCGC GGTGCCCGAC TACCGCGGCA TCGTGCGCAA GTTCGGCCCG GCGGTGGTCG GCGTGGTGGT CAAGGGCGAA CGCCAGGCCA GCGCCGAGGA ACAGGCGCAG GGCGGCCTGC CGCCGGGCAT CGAGAACGAC CCGTACTTCC GCTTCTTCCG CGGCATGCCG GGCCAGCCCG GGCGCGGCCG CGGCGCGCAG CCGAACCAGC CGTTCCGCGG CCAGGGCTCG GGTTTCATCA TCTCGACCGA CGGCCTGATC CTGACCAACG CCCACGTGGT GCGCGACGCC AAGGAGGTCA CCGTCAAGCT CAGCGACCGG CGCGAGTTCG TGGCCAAGGT GCTGGGGGTC GACCCGGCCA CCGACATCGC CGTGCTGCGC ATCGAGGCCA AGGATCTGCC GACCGTGCGC CTGGGCGACC CGCGCCAGCT CGAAGTGGGC GACCCGGTGC TCGCCATCGG TGCGCCCTAC GGGCTGGAGC AGAGCGCTAC GCAGGGCATC GTCAGCGCCA AGGGCCGCTC GCTGCCGGGT GACGCGGTGG TGCCGTTCAT CCAGACCGAC GCGGCCGTCA ACCCCGGCAA CTCGGGCGGC CCGCTGTTCG ACGGCGGCGG CGCGGTGGTC GGCATCAACG CGCAGATCTA CTCGCAAAGC GGCGGCTACC AGGGCCTGAG CTTCGCGATC CCGATCAACG TGGCGCTGCA GGTCAAGGAC CAGATCGTCG CCACCGGCCG CGCCAGCCAC GCCCGGCTGG GCGTGACGGT GCAGGACGTC GACCAGGCGC TGGCCGAATC CTTCGGTTTG CCCCGGCCGG ACGGCGCGCT GATCTCGAGC GTGGCGCCCC AGAGCGCCGC GGCGGCCGCC GGCCTGCAGC CCGGTGACGT GATCACCGCG GTCAACGGCG AGCCGGTGCT GCGCTCGGGT TCGCTGTCGA GCCTGATCGG GCTGTCGACG CCGGGTCAGA AGGTGCAGCT CAAGGTCTGG CGCGACCACG CCGCCCGCGA CATCGACGCC AAGCTGGGCA GCGCCGACGA CGGCGCCAAC CCGACCGCCC AGGCCGAGGA CGACGCCCAG CGCGGCGGCC AGATCGGCCT GGCGCTGCGG CCGCTCACGC CGCAGGAGCG CCGCGACGCC CAGGTCGAAC AGGGCCTGCT CGTCGAACAG GTGACCGGCG CGGCCAGGAG CGCGGGCATC GAGGCCGGCG ACGTGCTGCT GGCGATCAAC GGCCAGCCGG TGCGCAGCAT CGAGCAGCTG CAGTCGGTGC TGATGAAGAA GCCCAAGCGC GTGGCGCTGC TGGTGCAGCG CGACGGCGAC AAGATCTTCG TGCCGGTGAG CCTGGGCTGA
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Protein sequence | MKTKNLTVAL VAAGVLGAGA ATAIGLPDWM KGRPAVNTEA TQAAAQTQLA LGTVNPAPVP MLAGDGAVPD YRGIVRKFGP AVVGVVVKGE RQASAEEQAQ GGLPPGIEND PYFRFFRGMP GQPGRGRGAQ PNQPFRGQGS GFIISTDGLI LTNAHVVRDA KEVTVKLSDR REFVAKVLGV DPATDIAVLR IEAKDLPTVR LGDPRQLEVG DPVLAIGAPY GLEQSATQGI VSAKGRSLPG DAVVPFIQTD AAVNPGNSGG PLFDGGGAVV GINAQIYSQS GGYQGLSFAI PINVALQVKD QIVATGRASH ARLGVTVQDV DQALAESFGL PRPDGALISS VAPQSAAAAA GLQPGDVITA VNGEPVLRSG SLSSLIGLST PGQKVQLKVW RDHAARDIDA KLGSADDGAN PTAQAEDDAQ RGGQIGLALR PLTPQERRDA QVEQGLLVEQ VTGAARSAGI EAGDVLLAIN GQPVRSIEQL QSVLMKKPKR VALLVQRDGD KIFVPVSLG
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