| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_0264 |
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| Symbol | |
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| ID | 6160509 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | + |
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| Start bp | 278717 |
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| End bp | 280453 |
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| Gene Length | 1737 bp |
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| Protein Length | 578 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 641663008 |
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| Product | peptidase M61 domain-containing protein |
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| Protein accession | YP_001789304 |
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| Protein GI | 171056955 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG3975] Predicted protease with the C-terminal PDZ domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 0.023247 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATCAGCT ACCACGTCGA GATCGCCGAC CTGCACGCCC ACCTGTTCCG CGTCACGCTG
ACGGTGGCCA AACCGGCGGC CGAGCAGACC CTGAGCCTGC CGGTGTGGAT CCCCGGCAGC
TACCTGGTGC GCGAGTTCTC GCGCCACCTC AGCGGCCTGC AGGCGCGCCA GGGCCAGACC
GAACGGGCGC TCGAACAGCT CGACAAGCGC AGCTGGCGGG TGCGCTGCAG CGGCCGGGCG
GCGCTGGTGG TGAGCTACCT CGTCTACGCC TTCGACGCCT CGGTGCGCAC CGCCTGGCTC
GACAGTCAGC GCGGCTTCTT CAACGCCACC AGCCTGTGCC TGTGCGCCGA AGGCCACGAG
GCCGACGAGC ACCGCCTGAG CCTGGGCGCG CTGCCGGCCG GCTGGCAGGT CGCGACCGGC
CTCGAGCGCA CCGCCAAGAG CGGCAAGAAC GCCTGGCGCG CCGACAGCTA CGACGCGCTG
ATCGACCACC CGTTCGAGCT CGGTGCGTTC TGGCGCGGCG AGTTCACGGC CTGCGGCGTG
CCGCATGAAT TTGTCGTGGC CGGCGCCGCA CCCGGCTTCG ACGGCGAACG CCTGCTGGCC
GACGCGCGCC GCATCTGCGA GGCGCAGATC CGCTTCTGGC ACGCCGACGC CAAGCCACCG
TTCGAGCGCT ACGTCTTCAT GCTGGCCGCC ACCGACGACG GCTACGGCGG CCTCGAACAC
CGCAACAGCA CCGCGCTGAT CTGCAACCGC CGCGACCTGC CGCGCCGCCC GGCGCCGGGC
AACGGCGTGG GCCTGAGCGA GGGCTACGTG ACGCTGCTGG GCCTGATCAG CCACGAGTAC
TTCCACACCT GGAACGTCAA GCGCCTCAAG CCCGCCGAGT TCGCGCCCTA CGACCTGACA
CGCGAGAACC CCACCGAGCT GCTGTGGTTC TTCGAGGGTT TCACCAGCTA CTACGACGAC
CTGTTCCTGC TGCGCGCCGG CCTGATCGAC GAGGGGCGCT ATTTCAAGCT GCTCGCCAAG
ACGATCAACC AGGTGCTCGG CACGCCCGGG CGCCAGGTGC AGAGCGTGGC GCAGTCGAGC
TTCGACGCCT GGCTCAAGTA CTACCGGCCC GACGAGAACA CCGCCAACGC CACCGTCAGC
TACTACACCA AGGGCGCGCT GGTGGCGCTG GCGCTCGACC TGACGCTGCG CCGCGCCGGA
CGCGGCACGC TCGACGCCGT GATGCGCACG CTCTGGCAGC GCAGCGGCGG CGGGCCGATC
AGCGAGGCCG ACATCGCCGC GGCCTTGCAG CAGGTCGGCC GACGCGACTT CGCCGACGAA
CTGGCCGCCT GGGTGCACGG CACCGCCGAC CTGCCGCTGG CCGAGCTGCT GGCGCTGATC
GGCGTCGAGC TCAAGCGCGA CCCGCCGACG CTGGCACAGC GCCTGGGTGC GCGCGTCAAC
GAGAGCCTGA AGGTGCAGGC GGTGCTGCGC GGTGGCGCGG CCGAACAGGC CGGGCTGGCG
GCCGGCGACG AGCTGCTGGC GCTCGACGGC TGGCGGCTGG CCAAGCTCGA CGACCTGCCG
CTGTACGGCG GCTTCGAGCG GCCGCTGCCG CTGCTGGTCA GCCGCGACCG GCGCCTGCTG
ACCTTGACGC TGCCGGCGCC CAAGGTCGAG GGCGCCGTCA GCCTGACGGC CACGCCCAAG
GCCGCGGCAC CGGCGCTGCG ACGCCGCCGC AGCTGGCTGG CGCAGTCGCT CGCCTGA
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| Protein sequence | MISYHVEIAD LHAHLFRVTL TVAKPAAEQT LSLPVWIPGS YLVREFSRHL SGLQARQGQT
ERALEQLDKR SWRVRCSGRA ALVVSYLVYA FDASVRTAWL DSQRGFFNAT SLCLCAEGHE
ADEHRLSLGA LPAGWQVATG LERTAKSGKN AWRADSYDAL IDHPFELGAF WRGEFTACGV
PHEFVVAGAA PGFDGERLLA DARRICEAQI RFWHADAKPP FERYVFMLAA TDDGYGGLEH
RNSTALICNR RDLPRRPAPG NGVGLSEGYV TLLGLISHEY FHTWNVKRLK PAEFAPYDLT
RENPTELLWF FEGFTSYYDD LFLLRAGLID EGRYFKLLAK TINQVLGTPG RQVQSVAQSS
FDAWLKYYRP DENTANATVS YYTKGALVAL ALDLTLRRAG RGTLDAVMRT LWQRSGGGPI
SEADIAAALQ QVGRRDFADE LAAWVHGTAD LPLAELLALI GVELKRDPPT LAQRLGARVN
ESLKVQAVLR GGAAEQAGLA AGDELLALDG WRLAKLDDLP LYGGFERPLP LLVSRDRRLL
TLTLPAPKVE GAVSLTATPK AAAPALRRRR SWLAQSLA
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