Gene Lcho_0258 details

Gene Information

• Locus tag: Lcho_0258
• ID: 6160577
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Leptothrix cholodnii SP-6
• Kingdom: Bacteria
• Replicon accession: NC_010524
• Strand: +
• Start bp: 273378
• End bp: 273941
• Gene Length: 564 bp
• Protein Length: 187 aa
• Translation table: 11
• GC content: 63%
• IMG OID: 641663002
• Product: peroxiredoxin
• Protein accession: YP_001789298
• Protein GI: 171056949
• COG category: [O] Posttranslational modification, protein turnover, chaperones
• COG ID: [COG0450] Peroxiredoxin
• TIGRFAM ID: [TIGR03137] peroxiredoxin

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: 21
• Fosmid unclonability p-value: 0.00225709
• Fosmid Hitchhiker: Yes
• Fosmid clonability: hitchhiker

Sequence

Gene sequence

ATGTCGCTGA TCAACACCAC CGTCCAGCCC TTCAAGGCCC AAGCTTTCCT GAACGGCAAG 
TTCATCGAAG TCACCGAAGC CAGCCTGAAG GGCAAGTGGT CGACGCTGAT CTTCATGCCC 
GCCGCGTTCA CCTTCAACTG CCCGACCGAA GTCGAAGACG CGGCCGCGAA CTACGCCGAG 
TTCCAGAAGC TGGAGACCGA GGTCTACATC ATCACGACCG ACACCCACTT CGCGCACAAG 
GTGTGGCACG AGACGTCGCC GGCCGTCGGC AAGGCCCAGT TCCCGCTGGT CGGCGACCCG 
ACGCATCAGC TGACGCGCGC TTTCGGCGTG CACATCGAAG AAGAAGGCCT GGCGCTGCGC 
GGCACCTTCA TCATCAACCC GGAAGGTCAG ATCAAGACCG CCGAAGTGCA CTCGAACGAG 
ATCGCCCGTG ACGTGTCGGA AACCCTGCGC AAGCTCAAGG CTGCCCAGTA CACCGCCAAG 
AACCCCGGCC AGGTCTGCCC GGCCAAGTGG AACGACGGCG CTGCGACCAT CACCCCGTCG 
CTCGACCTCG TCGGCAAGAT CTAA 

 

Protein sequence

MSLINTTVQP FKAQAFLNGK FIEVTEASLK GKWSTLIFMP AAFTFNCPTE VEDAAANYAE 
FQKLETEVYI ITTDTHFAHK VWHETSPAVG KAQFPLVGDP THQLTRAFGV HIEEEGLALR 
GTFIINPEGQ IKTAEVHSNE IARDVSETLR KLKAAQYTAK NPGQVCPAKW NDGAATITPS 
LDLVGKI