| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_0253 |
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| Symbol | |
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| ID | 6160529 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | - |
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| Start bp | 268558 |
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| End bp | 270324 |
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| Gene Length | 1767 bp |
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| Protein Length | 588 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 641662997 |
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| Product | cytochrome c oxidase, subunit I |
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| Protein accession | YP_001789293 |
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| Protein GI | 171056944 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG0843] Heme/copper-type cytochrome/quinol oxidases, subunit 1 |
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| TIGRFAM ID | [TIGR02891] cytochrome c oxidase, subunit I |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 0.00642572 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGGATCATC TGGATGCGGA TGCCGCCGAG TCGCACCCGG CCCCTCACGG TTTCTGGACC
ACCTACGTCT GGAGCCAGGA CCACAAGGTG ATCGCGATCC AGTACGCGAT CACCGCCATC
GCGGTCGGCC TGGTCGGCCT GGTGCTGTCG CACCTGATGC GCGCGCAGCT CGGTTTCCCC
GGAAAGCTCG ACTTCATCAC GCCCGAGCGC TACTACCAGT TCGTCACCCT GCACGGGATG
ATCATGGTGG TCTACCTGCT GACCGCGCTG TTCCTGGGCG GCTTCGGCAA CTACCTGATC
CCCTTGATGG TGGGCGCGCG CGACATGGTG TTTCCCTACC TCAACATGCT GAGCTTCTGG
GTCTACCTGC TGTCGGTGAT CGTGCTGATG GCCAGCTTCT TCGTGCCCGG CGGGCCGACC
GGCGCGGGCT GGACGCTCTA CCCGCCGCAG GCCATCCTGC CCGGCACACC CGGCAGCGAC
GCCGGCATCG TGCTGATGCT GGTGTCGCTG CTGATCTTCA TCGTCGCGGC CACGATGGGC
GGGCTCAACT ACGTCACCAC CGTGCTGCAG GCGCGCTGCG AGGGCATGAC GCTGCTGCGC
ATGCCGCTGA CGGTGTGGGG CATCTTCGTG GCCACCATCC TGGCGCTGCT GGCGTTTCCG
GCGCTGTTCG TCAGCGGCGT GATGATGCTG CTCGACAAGA CGCTGGGCAC CAGCTTCTTC
ATGCCCGCGC TGATCTCGAT GGGCGCGCCC AGCGCCACCC AGGGCGGCAG CCCGCTGCTG
TTCCAGCACC TGTTCTGGTT CTTCGGCCAC CCCGAGGTCT ACATCGTCGC GCTGCCGGCC
TTCGGCATCG TCTCCGACCT GATCAGCGTG CATGCGCGCA AGGCGATCTT CGGCTACCGC
ACGATGGTGT GGGCGATCGT CGCGATCGGC GGCCTGAGCT TCGTGGTCTG GGCCCACCAC
ATGTTCGTCA GCGGCATGAA CCCGTACTTC GGCTTCTTCT TCGCCACCAG CACGCTGATC
ATCGCCGTGC CCACCGCGAT CAAGGTCTAC AACTGGGTGC TCACCATCTG GCGCGGCGAC
ATCCACCTCA CGGTGCCGAT GCTGTTCGCG CTGGCCTTCG TCTGCACCTT CACGGTGGGC
GGGCTGACGG GGCTGTTTCT GGGCAACGTC AGCGTCGACA TCCCGCTGTC GGGCACCTAC
TTCGTGGTCG CGCACTTCCA CATGGTGATG GGCGTGGCGC CGATCCTGGT GGTGTTCGGC
GGCATCTACC ACTGGTACCC GAAGATCACC GGCCGCCTGC TCGACGACCG GCTGGGCAAG
CTGCATTTCT GGATCACCTT TCTCGGCACC TACGCGATCT ATTTCCCGAT GCACTACCTC
GGCGTGCTCG GCATGCCGCG GCGCTACTAC AACTTCGACG CCTACCAGTT CATCCCGGCC
TCGGCGCATG CGCTCAACGT CTTCATCAGC GTGCTGGCCT TCGTGGTGGG CGCGGCGCAG
CTGCTGTTCC TGTTCAACCT GGCCTGGAGC GCACGGCGTG GACGGCCGGC CGGGCCGAAC
CCATGGCGTG CTGCCTCGCT CGAATGGCAG ACGCCGCAGA CCCCGCCCGG CCACGGCAAC
TGGGGCGCGC AGCTGCCGGT CGCCAGCCGC TGGGCCTACG CCTACAGCGT GCCGGGCGCG
CACGACGACT ACATCGCCCA GAACGCGGTG CGCGGCGCGG GCGGCATCGA ACCCGATCCA
CCCCGCACGG GAGGGAAATC GCCATGA
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| Protein sequence | MDHLDADAAE SHPAPHGFWT TYVWSQDHKV IAIQYAITAI AVGLVGLVLS HLMRAQLGFP
GKLDFITPER YYQFVTLHGM IMVVYLLTAL FLGGFGNYLI PLMVGARDMV FPYLNMLSFW
VYLLSVIVLM ASFFVPGGPT GAGWTLYPPQ AILPGTPGSD AGIVLMLVSL LIFIVAATMG
GLNYVTTVLQ ARCEGMTLLR MPLTVWGIFV ATILALLAFP ALFVSGVMML LDKTLGTSFF
MPALISMGAP SATQGGSPLL FQHLFWFFGH PEVYIVALPA FGIVSDLISV HARKAIFGYR
TMVWAIVAIG GLSFVVWAHH MFVSGMNPYF GFFFATSTLI IAVPTAIKVY NWVLTIWRGD
IHLTVPMLFA LAFVCTFTVG GLTGLFLGNV SVDIPLSGTY FVVAHFHMVM GVAPILVVFG
GIYHWYPKIT GRLLDDRLGK LHFWITFLGT YAIYFPMHYL GVLGMPRRYY NFDAYQFIPA
SAHALNVFIS VLAFVVGAAQ LLFLFNLAWS ARRGRPAGPN PWRAASLEWQ TPQTPPGHGN
WGAQLPVASR WAYAYSVPGA HDDYIAQNAV RGAGGIEPDP PRTGGKSP
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