Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lcho_0249 |
Symbol | |
ID | 6160537 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Leptothrix cholodnii SP-6 |
Kingdom | Bacteria |
Replicon accession | NC_010524 |
Strand | + |
Start bp | 266201 |
End bp | 266644 |
Gene Length | 444 bp |
Protein Length | 147 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 641662993 |
Product | UspA domain-containing protein |
Protein accession | YP_001789289 |
Protein GI | 171056940 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG0589] Universal stress protein UspA and related nucleotide-binding proteins |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 24 |
Fosmid unclonability p-value | 0.00974086 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGTACAAGC ACCTGTTTGT TCCCGTTGAT GGCTCCGAAC TGTCGCAGCG TGCGATGGAC GGCAGCATCG CCCTGGCCTT GCAGCTGGGC GCGCGCATCA CCGGTTTCGT GGCCGAGCCC GACCTGCCGC TGTCGGCCGT CAGCGGCAAC GTGTCCACCT TCACCAGCCG TGTCGAAGCC CACGACGCCC GCACCGAGGC GCATGCCTAC GCGCTGCTCG GCCAGTTCGA GGAGCGTGCC CGCACGGCCG GCGTCGAGTT CAGCGGCAAG CACCTGCGCA CCCCCGCGGT GGACCAGGCG ATCGCCGATG CCGCCGAGGA ATCCGGCGCC GACATGATCG TGATGGTCAC GCACGCCCGC GGCACGCTGG GCGAACTGGT GTTCGGCTCG CACACCAAGA CGCTGATCTC GCGCACCAAG CTGCCGCTGC TGGTGTTGCA CTGA
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Protein sequence | MYKHLFVPVD GSELSQRAMD GSIALALQLG ARITGFVAEP DLPLSAVSGN VSTFTSRVEA HDARTEAHAY ALLGQFEERA RTAGVEFSGK HLRTPAVDQA IADAAEESGA DMIVMVTHAR GTLGELVFGS HTKTLISRTK LPLLVLH
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