Gene Lcho_0249 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_0249 
Symbol 
ID6160537 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand
Start bp266201 
End bp266644 
Gene Length444 bp 
Protein Length147 aa 
Translation table11 
GC content68% 
IMG OID641662993 
ProductUspA domain-containing protein 
Protein accessionYP_001789289 
Protein GI171056940 
COG category[T] Signal transduction mechanisms 
COG ID[COG0589] Universal stress protein UspA and related nucleotide-binding proteins 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones24 
Fosmid unclonability p-value0.00974086 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGTACAAGC ACCTGTTTGT TCCCGTTGAT GGCTCCGAAC TGTCGCAGCG TGCGATGGAC 
GGCAGCATCG CCCTGGCCTT GCAGCTGGGC GCGCGCATCA CCGGTTTCGT GGCCGAGCCC
GACCTGCCGC TGTCGGCCGT CAGCGGCAAC GTGTCCACCT TCACCAGCCG TGTCGAAGCC
CACGACGCCC GCACCGAGGC GCATGCCTAC GCGCTGCTCG GCCAGTTCGA GGAGCGTGCC
CGCACGGCCG GCGTCGAGTT CAGCGGCAAG CACCTGCGCA CCCCCGCGGT GGACCAGGCG
ATCGCCGATG CCGCCGAGGA ATCCGGCGCC GACATGATCG TGATGGTCAC GCACGCCCGC
GGCACGCTGG GCGAACTGGT GTTCGGCTCG CACACCAAGA CGCTGATCTC GCGCACCAAG
CTGCCGCTGC TGGTGTTGCA CTGA
 
Protein sequence
MYKHLFVPVD GSELSQRAMD GSIALALQLG ARITGFVAEP DLPLSAVSGN VSTFTSRVEA 
HDARTEAHAY ALLGQFEERA RTAGVEFSGK HLRTPAVDQA IADAAEESGA DMIVMVTHAR
GTLGELVFGS HTKTLISRTK LPLLVLH